RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 PRTGQ2VWP7 1150 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 FAM90A2PQ658T7 463 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 CCDC144NLQ6NUI1 221 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 UEVLDQ8IX04 471 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 ASB5Q8WWX0 329 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 NLRP4Q96MN2 994 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 ELOVL1Q9BW60 279 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 MYO1AQ9UBC5 1043 aa4.52□□□□□ -1.69
PRKDC-210ENST00000541488 TMEM272A0A1B0GTI8 110 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 FAM234BA2RU67 622 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 FAM90A10PA6NDY2 464 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 CLCA1A8K7I4 914 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 M0QZQ0 153 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 PMM2O15305 246 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 SYF2O95926 243 aaKnown RBP4.51□□□□□ -1.69
PRKDC-210ENST00000541488 TNFRSF1BP20333 461 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 GABRB3P28472 473 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 DUSP1P28562 367 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 HOXD12P35452 270 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 SLC12A2P55011 1212 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 PPATQ06203 517 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 MANEAQ5SRI9 462 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 HIBCHQ6NVY1 386 aaPredicted RBP4.51□□□□□ -1.69
PRKDC-210ENST00000541488 PIK3AP1Q6ZUJ8 805 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 B4GALNT4Q76KP1 1039 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 BEND5Q7L4P6 421 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 KRT27Q7Z3Y8 459 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 RFX6Q8HWS3 928 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 RHPN2Q8IUC4 686 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 MMP21Q8N119 569 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 TMEM199Q8N511 208 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 GLIS1Q8NBF1 620 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 ACRBPQ8NEB7 543 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 PARD3BQ8TEW8 1205 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 SNX27Q96L92 541 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 CAMK1GQ96NX5 476 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 GPR78Q96P69 363 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 SENP7Q9BQF6 1050 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 TTLL2Q9BWV7 592 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 EPS8L2Q9H6S3 715 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 MSRB1Q9NZV6 116 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 ZNF580Q9UK33 172 aa4.51□□□□□ -1.69
PRKDC-210ENST00000541488 IGLV5-39A0A0G2JS06 123 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 A0A1W2PPC4 97 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 F8W810 466 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 PARNO95453 639 aaKnown RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 CCKBRP32239 447 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 SLC8A1P32418 973 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 IL6STP40189 918 aaPredicted RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 SOX2P48431 317 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 SRSF1Q07955 248 aaKnown RBP eCLIP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 IFIT5Q13325 482 aaKnown RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 SAFBQ15424 915 aaKnown RBP eCLIP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ODF3L2Q3SX64 289 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ARL13BQ3SXY8 428 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ANXA2RQ3ZCQ2 193 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 DAB2IPQ5VWQ8 1189 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 NUGGCQ68CJ6 796 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 C16orf89Q6UX73 402 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ARL14EPQ8N8R7 260 aaPredicted RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 GATA5Q9BWX5 397 aaPredicted RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 SEMA4BQ9NPR2 832 aaPredicted RBP4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ANAPC4Q9UJX5 808 aa4.5□□□□□ -1.69
PRKDC-210ENST00000541488 ZNF814B7Z6K7 855 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 J3KTA2 159 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 KCNQ3O43525 872 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 TOMM40O96008 361 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 VIPP01282 170 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 IDEP14735 1019 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 MATN1P21941 496 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 CCKARP32238 428 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 ZNF84P51523 738 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 NANOS2P60321 138 aaKnown RBP4.49□□□□□ -1.69
PRKDC-210ENST00000541488 B4GALNT1Q00973 533 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 ATP1A4Q13733 1029 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 MIDNQ504T8 468 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 FAM209BQ5JX69 171 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 ACSM6Q6P461 480 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 FBXO38Q6PIJ6 1188 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 UBE2Q1Q7Z7E8 422 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 CLASRPQ8N2M8 674 aaKnown RBP4.49□□□□□ -1.69
PRKDC-210ENST00000541488 OR52L2PQ8NGH6 319 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 KAT2BQ92831 832 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 EME1Q96AY2 570 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 MCRS1Q96EZ8 462 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 TUBB6Q9BUF5 446 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 NAA15Q9BXJ9 866 aaKnown RBP4.49□□□□□ -1.69
PRKDC-210ENST00000541488 TRIM2Q9C040 744 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 CDCP1Q9H5V8 836 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 RGL1Q9NZL6 768 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 IPO11Q9UI26 975 aaKnown RBP4.49□□□□□ -1.69
PRKDC-210ENST00000541488 UTS2RQ9UKP6 389 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 B3GNT3Q9Y2A9 372 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 PCDHB7Q9Y5E2 793 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 TTC3P53804 2025 aa4.49□□□□□ -1.69
PRKDC-210ENST00000541488 USP12O75317 370 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 OAZ2O95190 189 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 CHRNB1P11230 501 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 EGR1P18146 543 aa4.48□□□□□ -1.69
PRKDC-210ENST00000541488 TFEBP19484 476 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms