RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 RPL10AP62906 217 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TUBA4AP68366 448 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PHEXP78562 749 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TXNL4AP83876 142 aaKnown RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 MTMR2Q13614 643 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 DPYSQ14117 519 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PGM5Q15124 567 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PIGGQ5H8A4 983 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SH3D19Q5HYK7 790 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 DCAF8Q5TAQ9 597 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 N4BP2L1Q5TBK1 243 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 XRRA1Q6P2D8 792 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 KLHL35Q6PF15 583 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 EPGNQ6UW88 154 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 Q6ZNX1 250 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 FAM196AQ6ZSG2 479 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SMYD1Q8NB12 490 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 HIPK4Q8NE63 616 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 OR5B17Q8NGF7 314 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CEP70Q8NHQ1 597 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 SYTL5Q8TDW5 730 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 DEPDC1BQ8WUY9 529 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 KBTBD7Q8WVZ9 684 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CSRNP1Q96S65 589 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 CALN1Q9BXU9 219 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 HAPLN2Q9GZV7 340 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 POLR3FQ9H1D9 316 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PLGRKTQ9HBL7 147 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ASNSD1Q9NWL6 643 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 TMOD2Q9NZR1 351 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PCDHB12Q9Y5F1 795 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 PCDHAC2Q9Y5I4 1007 aa9.97□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF646O15015 1829 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-230ENST00000495090 hCG_2014768A0A024R1R8 64 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF487B1APH4 448 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF701M0R085 212 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-230ENST00000495090 NFIBO00712 420 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 KCNN4O15554 427 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 GLDCP23378 1020 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 YY1P25490 414 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 NRLP54845 237 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 NUP107P57740 925 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PSMC1P62191 440 aaKnown RBP9.96□□□□□ -0.81
SYNE1-230ENST00000495090 CBX3Q13185 183 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 TMED1Q13445 227 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 FLOT2Q14254 428 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF423Q2M1K9 1284 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 DACT2Q5SW24 774 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 TRMT10BQ6PF06 316 aaKnown RBP9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PACS1Q6VY07 963 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 ZNF534Q76KX8 674 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 XYLT1Q86Y38 959 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 BRSK2Q8IWQ3 736 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 CHERPQ8IWX8 916 aaKnown RBP9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PHTF2Q8N3S3 785 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 TFAP2BQ92481 460 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 MASTLQ96GX5 879 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 RNF157Q96PX1 679 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 MSTO1Q9BUK6 570 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PNPOQ9NVS9 261 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 COPG2Q9UBF2 871 aa9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PAIP2BQ9ULR5 123 aaKnown RBP9.96□□□□□ -0.81
SYNE1-230ENST00000495090 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 RGSL1A5PLK6 1076 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TMEM114B3SHH9 223 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 DCXO43602 365 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ZBTB14O43829 449 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CBFA2T3O75081 653 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 H2AFYO75367 372 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 BCAS2O75934 225 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ZBED1O96006 694 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ALDOAP04075 364 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 C8BP07358 591 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 APRTP07741 180 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PSMC3P17980 439 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 NCF2P19878 526 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 MX2P20592 715 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 NAMPTP43490 491 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 SOX10P56693 466 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TGFB2P61812 414 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 NIPAL4Q0D2K0 466 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PDE1CQ14123 709 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 RFTN1Q14699 578 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 HERC3Q15034 1050 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PDK2Q15119 407 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CCDC153Q494R4 210 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 DENND1BQ6P3S1 775 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 NPNTQ6UXI9 565 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 BNC2Q6ZN30 1099 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TRIM67Q6ZTA4 783 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 RSPH3Q86UC2 560 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 C10orf107Q8IVU9 208 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PGAM4Q8N0Y7 254 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 KYQ8NBH2 561 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TSPAN14Q8NG11 270 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 RP9Q8TA86 221 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 NLRP7Q8WX94 980 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 HSPH1Q92598 858 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms