RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MIEF1Q9NQG6 463 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ARHGAP28Q9P2N2 729 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 PFDN2Q9UHV9 154 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 LNPEPQ9UIQ6 1025 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 NUDT5Q9UKK9 219 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 DPYSL4O14531 572 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 FARP2O94887 1054 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 RPN2P04844 631 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ARHGDIBP52566 201 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ALDH6A1Q02252 535 aaKnown RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 NR1D2Q14995 579 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 DCAF6Q58WW2 860 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 NT5DC1Q5TFE4 455 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SKA1Q96BD8 255 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 FAM120BQ96EK7 910 aaKnown RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 NOL6Q9H6R4 1146 aaKnown RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 REEP1Q9H902 201 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SORBS3O60504 671 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 LCP1P13796 627 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 OXCT1P55809 520 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 AP3S2P59780 193 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 ITGB3BPQ13352 177 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-209ENST00000472056 DUSP12Q9UNI6 340 aa13.63□□□□□ -0.23
COL6A3-209ENST00000472056 SPEF2Q9C093 1822 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 TSPAN19P0C672 248 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 STARP49675 285 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 MMP14P50281 582 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 STK40Q8N2I9 435 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF513Q8N8E2 541 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 VAT1Q99536 393 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 CACNA1CQ13936 2221 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 RIPK2O43353 540 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 PRKAB2O43741 272 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 PAX7P23759 505 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 FLT3P36888 993 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 CUL2Q13617 745 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ACCSLQ4AC99 568 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 STRA8Q7Z7C7 330 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 USP18Q9UMW8 372 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 TULP4Q9NRJ4 1543 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 FAM170AA1A519 330 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 NR5A2O00482 541 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 SEC24AO95486 1093 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 GP5P40197 560 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ATP12AP54707 1039 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 EZH2Q15910 746 aaKnown RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 GALNT18Q6P9A2 607 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 KCNB2Q92953 911 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 CELF4Q9BZC1 486 aaKnown RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF624Q9P2J8 865 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 TRHDEQ9UKU6 1024 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 FASTKQ14296 549 aaKnown RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 PRR5LQ6MZQ0 368 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 BHLHB9Q6PI77 547 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 GJD3Q8N144 294 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ZCCHC9Q8N567 271 aaKnown RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 TEX13BQ9BXU2 312 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 MTMR12Q9C0I1 747 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 LRMDAQ9H2I8 198 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 CYP3A43Q9HB55 503 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ASAP1Q9ULH1 1129 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 TYW3Q6IPR3 259 aaKnown RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 FBXL16Q8N461 479 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 MCM8Q9UJA3 840 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ERGIC3Q9Y282 383 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF24P17028 368 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 DGKKQ5KSL6 1271 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 OOSP2Q86WS3 158 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 PJA1Q8NG27 643 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 SPATA33Q96N06 139 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 IRX2Q9BZI1 471 aaPredicted RBP13.62□□□□□ -0.23
COL6A3-209ENST00000472056 VPS51Q9UID3 782 aa13.62□□□□□ -0.23
COL6A3-209ENST00000472056 RAG1P15918 1043 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 SCRN3Q0VDG4 424 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 FBXO36Q8NEA4 188 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RDH11Q8TC12 318 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 AGAP3Q96P47 875 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ADI1Q9BV57 179 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 CLN6Q9NWW5 311 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 TMA7Q9Y2S6 64 aaKnown RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 INPP4BO15327 924 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ZNF682O95780 498 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 RPS6KA3P51812 740 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 BCAT1P54687 386 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 NOTUMQ6P988 496 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ENGASEQ8NFI3 743 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 MAGEE1Q9HCI5 957 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 HPS4Q9NQG7 708 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 ASTN2O75129 1339 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-209ENST00000472056 TRIM43BA6NCK2 446 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L15C9J2P7 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L13C9JLJ4 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L11C9JVI0 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L18D6R9N7 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L22D6RA61 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L17D6RBQ6 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L19D6RCP7 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 USP17L20D6RJB6 530 aa13.61□□□□□ -0.23
COL6A3-209ENST00000472056 GSTM1P09488 218 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms