RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ATP5BP06576 529 aaKnown RBP8.13□□□□□ -1.11
CD44-211ENST00000442151 SERPINF2P08697 491 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 CISD3P0C7P0 127 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 SHC2P98077 582 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 TRIP4Q15650 581 aaPredicted RBP8.13□□□□□ -1.11
CD44-211ENST00000442151 CCDC6Q16204 474 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 GOLGA7BQ2TAP0 167 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 NUGGCQ68CJ6 796 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 LCLAT1Q6UWP7 414 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 SCD5Q86SK9 330 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 TMEFF1Q8IYR6 380 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 CADM4Q8NFZ8 388 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 SPATA20Q8TB22 786 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 PRCCQ92733 491 aaPredicted RBP8.13□□□□□ -1.11
CD44-211ENST00000442151 SEMA4DQ92854 862 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 TATDN2Q93075 761 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 NUP58Q9BVL2 599 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 PRR14Q9BWN1 585 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 ELOVL2Q9NXB9 296 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 SLC12A6Q9UHW9 1150 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 PILRBQ9UKJ0 227 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 TSPAN16Q9UKR8 245 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 NFE2L3Q9Y4A8 694 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 STON1Q9Y6Q2 735 aa8.13□□□□□ -1.11
CD44-211ENST00000442151 WDR87Q6ZQQ6 2873 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 SCAMP3O14828 347 aaKnown RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 OPHN1O60890 802 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ADAM23O75077 832 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 HMBSP08397 361 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 GABRG2P18507 467 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 BCKDHBP21953 392 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 CD6P30203 668 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 FMO5P49326 533 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 NOVA1P51513 510 aaKnown RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 OXCT1P55809 520 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ZBTB16Q05516 673 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ZNF33AQ06730 810 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 SLC14A1Q13336 389 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 MPP7Q5T2T1 576 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ADGRF1Q5T601 910 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 N4BP2L1Q5TBK1 243 aaPredicted RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 BSPRYQ5W0U4 402 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 IL27RAQ6UWB1 636 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 GPRIN1Q7Z2K8 1008 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 DENND1CQ8IV53 801 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 RGL4Q8IZJ4 473 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 TRIML1Q8N9V2 468 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ENGASEQ8NFI3 743 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ULBP1Q9BZM6 244 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 PRDM16Q9HAZ2 1276 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 GDPD2Q9HCC8 539 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ITM2CQ9NQX7 267 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 POLR3BQ9NW08 1133 aaPredicted RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 OSER1Q9NX31 292 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 THAP10Q9P2Z0 257 aaPredicted RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 AGO1Q9UL18 857 aaKnown RBP8.12□□□□□ -1.11
CD44-211ENST00000442151 PCDHB9Q9Y5E1 797 aa8.12□□□□□ -1.11
CD44-211ENST00000442151 ATG2BQ96BY7 2078 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 TMEM8BA6NDV4 472 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 GREM1O60565 184 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 MOCS3O95396 460 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 CFIP05156 583 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 PMLP29590 882 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 MFAP3P55082 362 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 ST8SIA6P61647 398 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 IRX4P78413 519 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 GCNT1Q02742 428 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 MEA1Q16626 185 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 UAP1L1Q3KQV9 507 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 FYB2Q5VWT5 728 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 PEAR1Q5VY43 1037 aaPredicted RBP8.11□□□□□ -1.11
CD44-211ENST00000442151 EGFLAMQ63HQ2 1017 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 TMEM270Q6UE05 265 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 KIAA1324Q6UXG2 1013 aaKnown RBP8.11□□□□□ -1.11
CD44-211ENST00000442151 BEND5Q7L4P6 421 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 FMNL3Q8IVF7 1028 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 SMYD4Q8IYR2 804 aaPredicted RBP8.11□□□□□ -1.11
CD44-211ENST00000442151 AHI1Q8N157 1196 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 PPM1KQ8N3J5 372 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 EHBP1Q8NDI1 1231 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 RLN3Q8WXF3 142 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 SKA1Q96BD8 255 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 ELMO3Q96BJ8 720 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 SIPA1Q96FS4 1042 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 ZNF419Q96HQ0 510 aaPredicted RBP8.11□□□□□ -1.11
CD44-211ENST00000442151 MED15Q96RN5 788 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 CALCOCO1Q9P1Z2 691 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 TPX2Q9ULW0 747 aaKnown RBP8.11□□□□□ -1.11
CD44-211ENST00000442151 SCML1Q9UN30 329 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 NCKAP1Q9Y2A7 1128 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD44-211ENST00000442151 CACNA1AO00555 2505 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 SPAG17Q6Q759 2223 aa8.11□□□□□ -1.11
CD44-211ENST00000442151 IGHV1OR15-9A0A0B4J2B8 117 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 A0A1B0GTW7 788 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 LNP1A1A4G5 178 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 MEI4A8MW99 385 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 O00370 1275 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 MDM4O15151 490 aa8.1□□□□□ -1.11
CD44-211ENST00000442151 RNASEH1O60930 286 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms