RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KCNIP3Q9Y2W7 256 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 OVGP1Q12889 678 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM171BQ6P995 826 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 BBS4Q96RK4 519 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 MLH3Q9UHC1 1453 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 C15orf38-AP3S2A0A0A6YYH1 394 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TRIM64A6NGJ6 449 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 LOC110117498-PIK3R3F6TDL0 507 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 H7C1W4 665 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 EPN2O95208 641 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TNNI3P19429 210 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 PIK3R3Q92569 461 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 ADGRE3Q9BY15 652 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 AP3M1Q9Y2T2 418 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 THOC2Q8NI27 1593 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 LAMC1P11047 1609 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 IL18RAPO95256 599 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 PDIA6Q15084 440 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM81AQ8TBF8 368 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 BTBD9Q96Q07 612 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 TSPAN18Q96SJ8 248 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC6A15Q9H2J7 730 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 LRRC4BQ9NT99 713 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 RBP5P82980 135 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 WDR72Q3MJ13 1102 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 ERP44Q9BS26 406 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 CFAP74Q9C0B2 1584 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 PRMT3O60678 531 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 CDKL1Q00532 357 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 RIPK1Q13546 671 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM20AQ96MK3 541 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 GNPTGQ9UJJ9 305 aa13.64□□□□□ -0.23
CCDC88A-204ENST00000413716 PRAG1Q86YV5 1406 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PBLDP30039 288 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 OLR1P78380 273 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 MSLNQ13421 630 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 TIPINQ9BVW5 301 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 SNX6Q9UNH7 406 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF232Q9UNY5 417 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CACNB3P54284 484 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 MFSD14CQ5VZR4 134 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 SMIM5Q71RC9 77 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 HPS1Q92902 700 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 WHRNQ9P202 907 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 TPBGLP0DKB5 382 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 STOX1Q6ZVD7 989 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CCDC54Q8NEL0 328 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PHB2Q99623 299 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ISCUQ9H1K1 167 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PCDHA6Q9UN73 950 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CORO2BQ9UQ03 480 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PCDHA8Q9Y5H6 950 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 GATBO75879 557 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CRTAMO95727 393 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ASNSP08243 561 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 HMBSP08397 361 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FSHRP23945 695 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC34A1Q06495 639 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ACAP1Q15027 740 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CCNJLQ8IV13 435 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 TCF7L2Q9NQB0 619 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 RBM12Q9NTZ6 932 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PRELID1Q9Y255 219 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 A0A088AWK7 358 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PGRMC2O15173 223 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 APOL3O95236 402 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF10P21506 573 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 GPR15P49685 360 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FAPQ12884 760 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 WASHC2DQ5SRD0 308 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 RGSL1A5PLK6 1076 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CD4P01730 458 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 A1BGP04217 495 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 DENND5AQ6IQ26 1287 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FSTL5Q8N475 847 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 CHST12Q9NRB3 414 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM49BQ9NUQ9 324 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 HOXC10Q9NYD6 342 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 PVALEFA0A1B0GWK0 134 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ATP5BP06576 529 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ATP2C1P98194 919 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 HIPK1Q86Z02 1210 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 FNDC5Q8NAU1 212 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 MND1Q9BWT6 205 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 JPH1Q9HDC5 661 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 ENTPD4Q9Y227 616 aa13.63□□□□□ -0.23
CCDC88A-204ENST00000413716 LDOC1O95751 146 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 PDX1P52945 283 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNA10Q16322 511 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 STK32CQ86UX6 486 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SAGE2PA6NJ88 616 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 CES2O00748 559 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 PMPCBO75439 489 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNMA1Q12791 1236 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 SAMD4BQ5PRF9 694 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 OR8H3Q8N146 312 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 DHRSXQ8N5I4 330 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 KCNB2Q92953 911 aa13.62□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF221Q9UK13 617 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms