RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 TLR8Q9NR97 1041 aaKnown RBP9.92□□□□□ -0.82
NEDD9-203ENST00000397378 PANK4Q9NVE7 773 aa9.92□□□□□ -0.82
NEDD9-203ENST00000397378 HSPBP1Q9NZL4 362 aa9.92□□□□□ -0.82
NEDD9-203ENST00000397378 THAP10Q9P2Z0 257 aaPredicted RBP9.92□□□□□ -0.82
NEDD9-203ENST00000397378 SLC27A6Q9Y2P4 619 aa9.92□□□□□ -0.82
NEDD9-203ENST00000397378 ARID1BQ8NFD5 2236 aaPredicted RBP9.92□□□□□ -0.82
NEDD9-203ENST00000397378 NBPF19A0A087WUL8 3843 aa9.92□□□□□ -0.82
NEDD9-203ENST00000397378 PLXNA2O75051 1894 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 DXOO77932 396 aaKnown RBP9.91□□□□□ -0.82
NEDD9-203ENST00000397378 DLATP10515 647 aaKnown RBP9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CKMT2P17540 419 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 TNNI1P19237 187 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 ACO1P21399 889 aaKnown RBP9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CD27P26842 260 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 ATICP31939 592 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 ATP5C1P36542 298 aaKnown RBP9.91□□□□□ -0.82
NEDD9-203ENST00000397378 PGFP49763 221 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 PSMD6Q15008 389 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 E2F5Q15329 346 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 ZSCAN23Q3MJ62 389 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 HIST2H2BCQ6DN03 193 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 KLHDC10Q6PID8 442 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 Q6ZNB5 142 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 STXBP4Q6ZWJ1 553 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 FUKQ8N0W3 1084 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 SAP25Q8TEE9 199 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 BHMTQ93088 406 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 TNIP3Q96KP6 325 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CGRRF1Q99675 332 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 TRIM9Q9C026 710 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 XYLT2Q9H1B5 865 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 VRTNQ9H8Y1 702 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CSNK1G1Q9HCP0 422 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CYLDQ9NQC7 956 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 MAN2B2Q9Y2E5 1009 aa9.91□□□□□ -0.82
NEDD9-203ENST00000397378 CREBBPQ92793 2442 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 BLACEA4D250 179 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 VILLO15195 856 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 EIF3DO15371 548 aaKnown RBP eCLIP9.9□□□□□ -0.82
NEDD9-203ENST00000397378 USP12O75317 370 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 AP1G2O75843 785 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SEMA4FO95754 770 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 TBX18O95935 607 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 C7P10643 843 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 HOXD13P35453 343 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 TXLNAP40222 546 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 COPAP53621 1224 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 BCAT1P54687 386 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 CDH8P55286 799 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 RIPPLY3P57055 190 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 E2F1Q01094 437 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 CYP24A1Q07973 514 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 TRPC3Q13507 836 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SNRNP35Q16560 246 aaKnown RBP9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SGO2Q562F6 1265 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 CCDC73Q6ZRK6 1079 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 CCDC65Q8IXS2 484 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 ZMIZ2Q8NF64 920 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 UCMAQ8WVF2 138 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SYAP1Q96A49 352 aaPredicted RBP9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SKA1Q96BD8 255 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 TMX3Q96JJ7 454 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 PSMG3-AS1Q96PY0 264 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SMOQ99835 787 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 MED10Q9BTT4 135 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 BTBD1Q9H0C5 482 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 POLR1BQ9H9Y6 1135 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 LRRC4CQ9HCJ2 640 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 KRT82Q9NSB4 513 aa9.9□□□□□ -0.82
NEDD9-203ENST00000397378 FBXO2Q9UK22 296 aaPredicted RBP9.9□□□□□ -0.82
NEDD9-203ENST00000397378 SRPRBQ9Y5M8 271 aaKnown RBP9.9□□□□□ -0.82
NEDD9-203ENST00000397378 NOTCH2Q04721 2471 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 YKT6O15498 198 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 BEST1O76090 585 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 PENKP01210 267 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 EPHA8P29322 1005 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 STAT6P42226 847 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 PLA2G4AP47712 749 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 LSSP48449 732 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 ARRB1P49407 418 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 MFAP3P55082 362 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 MYL6P60660 151 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 SNRPFP62306 86 aaKnown RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 RACK1P63244 317 aaKnown RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 EIF4HQ15056 248 aaKnown RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 SHBQ15464 509 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 LINC00303Q3SY05 128 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 ZNF276Q8N554 614 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 RDH13Q8NBN7 331 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 ZNF516Q92618 1163 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 EXTL1Q92935 676 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 CCDC97Q96F63 343 aaPredicted RBP9.89□□□□□ -0.83
NEDD9-203ENST00000397378 P2RY11Q96G91 374 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 SLC6A18Q96N87 628 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 DEPDC7Q96QD5 511 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 LHX5Q9H2C1 402 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 SMYD3Q9H7B4 428 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 ASCL3Q9NQ33 180 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 GDF3Q9NR23 364 aa9.89□□□□□ -0.83
NEDD9-203ENST00000397378 OSER1Q9NX31 292 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms