RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TMC5Q6UXY8 1006 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 FBXO25Q8TCJ0 367 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ADGRE3Q9BY15 652 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 UBXN6Q9BZV1 441 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ACOT9Q9Y305 439 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 AP4S1Q9Y587 144 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 RGL2O15211 777 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 EIF2S1P05198 315 aaKnown RBP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 GRK4P32298 578 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ST13P50502 369 aaKnown RBP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 KCTD21Q4G0X4 260 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ZNF618Q5T7W0 954 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 SCUBE3Q8IX30 993 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 VPS45Q9NRW7 570 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 TNS3Q68CZ2 1445 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ZSCAN5CA6NGD5 496 aaPredicted RBP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 HLA-DQA2P01906 255 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 CDC25CP30307 473 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 OR1E1P30953 314 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 SEMA3FQ13275 785 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 C4orf22Q6V702 233 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 TPGS1Q6ZTW0 290 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ZNF34Q8IZ26 560 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 CACTIN-AS1Q8N1I8 211 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 APBA2Q99767 749 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 FOXP3Q9BZS1 431 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 LIMD1Q9UGP4 676 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 SAMD9LQ8IVG5 1584 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 USP12O75317 370 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 ACADSP16219 412 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 AMPD1P23109 780 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 DDR2Q16832 855 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 HERC6Q8IVU3 1022 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 LRRN4Q8WUT4 740 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 LBPP18428 481 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 CCR1P32246 355 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 CDH8P55286 799 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 C16orf72Q14CZ0 275 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 PDK2Q15119 407 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 RABL6Q3YEC7 729 aaPredicted RBP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 PARP8Q8N3A8 854 aa14.04□□□□□ -0.16
COL4A1-201ENST00000375820 NOL6Q9H6R4 1146 aaKnown RBP14.04□□□□□ -0.16
COL4A1-201ENST00000375820 TBC1D12O60347 775 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CLPTM1O96005 669 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 TALDO1P37837 337 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 LAMTOR4Q0VGL1 99 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 MARK2Q7KZI7 788 aaKnown RBP14.03□□□□□ -0.16
COL4A1-201ENST00000375820 PLEKHH3Q7Z736 793 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 EMILIN2Q9BXX0 1053 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 COMMD8Q9NX08 183 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CYP2C8P10632 490 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ALOX12P18054 663 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 RNF145Q96MT1 663 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CGRRF1Q99675 332 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CCDC167Q9P0B6 97 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 SIK3Q9Y2K2 1263 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 FAM86B1E9PN63 330 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 NAMPTP43490 491 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 RALGDSQ12967 914 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 PDZK1Q5T2W1 519 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ANKRD7Q92527 254 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 SLC5A5Q92911 643 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 MPP4Q96JB8 637 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ABCG8Q9H221 673 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CCDC154A6NI56 674 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 FAM220BPB1ANY3 271 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 NTSR2O95665 410 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ARMC4Q5T2S8 1044 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 SHOC2Q9UQ13 582 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 DCDC2CA8MYV0 355 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 KLRC2P26717 231 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CYP24A1Q07973 514 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 STX4Q12846 297 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ARHGEF19Q8IW93 802 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 COL26A1Q96A83 441 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 CCDC126Q96EE4 140 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ERGIC2Q96RQ1 377 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 COQ7Q99807 217 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 POMKQ9H5K3 350 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 ZNF624Q9P2J8 865 aaPredicted RBP14.03□□□□□ -0.16
COL4A1-201ENST00000375820 LRRC7Q96NW7 1537 aa14.03□□□□□ -0.16
COL4A1-201ENST00000375820 MICAL2O94851 1124 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 NDST1P52848 882 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 CORO7P57737 925 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 PDIA6Q15084 440 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 KLHL24Q6TFL4 600 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 LPCAT2Q7L5N7 544 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 GLT6D1Q7Z4J2 308 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 GDPD5Q8WTR4 605 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 USP7Q93009 1102 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 PDGFDQ9GZP0 370 aaPredicted RBP14.02□□□□□ -0.16
COL4A1-201ENST00000375820 STARD7Q9NQZ5 370 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 WHRNQ9P202 907 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 LYVE1Q9Y5Y7 322 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 CALB2P22676 271 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 SSTR1P30872 391 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 TUBP50607 506 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 PRKAG1P54619 331 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 SGCGQ13326 291 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms