RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PSMD5Q16401 504 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 DDR2Q16832 855 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 LVRNQ6Q4G3 990 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ZNF384Q8TF68 577 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 RIC8BQ9NVN3 520 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MARCH2Q9P0N8 246 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 RNF103-CHMP3A0A140T963 221 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 KLRG2A4D1S0 409 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 TRIM66O15016 1216 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 LMNAP02545 664 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ALDH18A1P54886 795 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ESRRGP62508 458 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 FOXR2Q6PJQ5 311 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 RFX8Q6ZV50 586 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 C12orf56Q8IXR9 622 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 LRRC52Q8N7C0 313 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ARMC2Q8NEN0 867 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 NEUROG2Q9H2A3 272 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 SHOC2Q9UQ13 582 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 PJA2O43164 708 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MGEA5O60502 916 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 APOA4P06727 396 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 CDH17Q12864 832 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 CDC16Q13042 620 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 HTR3CQ8WXA8 447 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MAGED4Q96JG8 741 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ACP6Q9NPH0 428 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 PCDHA3Q9Y5H8 950 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 COL1A2P08123 1366 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 F8VP50 259 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 GLUD1P00367 558 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 CALCAP01258 141 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 RPL9P32969 192 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 MAP2K2P36507 400 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 BRCC3P46736 316 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 SH3BGRP55822 239 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 POU4F1Q01851 419 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 CCL14Q16627 93 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 DENND1BQ6P3S1 775 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 PRUNE1Q86TP1 453 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 SLC26A11Q86WA9 606 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 DENND1CQ8IV53 801 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 PIP4K2CQ8TBX8 421 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 ABCC13Q9NSE7 274 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 UTP6Q9NYH9 597 aaKnown RBP11.9□□□□□ -0.5
SYNE1-204ENST00000367248 KIF17Q9P2E2 1029 aa11.9□□□□□ -0.5
SYNE1-204ENST00000367248 PHF20L1A8MW92 1017 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 ICAM3P32942 547 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 LBX1P52954 281 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 GRIK3Q13003 919 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 TARBP2Q15633 366 aaKnown RBP11.9□□□□□ -0.51
SYNE1-204ENST00000367248 ADGRE3Q9BY15 652 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 CLPBQ9H078 707 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 FAM105AQ9NUU6 356 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 PTCH2Q9Y6C5 1203 aa11.9□□□□□ -0.51
SYNE1-204ENST00000367248 SEPT4O43236 478 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 GLRA3O75311 464 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 IL1BP01584 269 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MMP3P08254 477 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 TRMT13Q9NUP7 481 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 CDY1Q9Y6F8 540 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MEI4A8MW99 385 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 DUSP11O75319 330 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 STMN1P16949 149 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 NPR3P17342 541 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 NOS2P35228 1153 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ATP6V1E1P36543 226 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 KDSRQ06136 332 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 AGAP9Q5VTM2 703 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 IARS2Q9NSE4 1012 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MRGBPQ9NV56 204 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 KCNK1O00180 336 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 TREHO43280 583 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ATP5BP06576 529 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 YBX3P16989 372 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 TNNI3P19429 210 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ECM1Q16610 540 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MIIPQ5JXC2 388 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 C18orf25Q96B23 403 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 CDC42EP4Q9H3Q1 356 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 DDX20Q9UHI6 824 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 A0A0B4J269 797 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 CLASP2O75122 1294 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ALOX15P16050 662 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 MGAT5Q09328 741 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 TUSC3Q13454 348 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 PTAR1Q7Z6K3 402 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 FAM71AQ8IYT1 594 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 C10orf53Q8N6V4 93 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ST13P5Q8NFI4 369 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 CCT8L2Q96SF2 557 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 PLK2Q9NYY3 685 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 TRHDEQ9UKU6 1024 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 USP15Q9Y4E8 981 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 IFRD1O00458 451 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 PYGMP11217 842 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 CYP2C18P33260 490 aa11.89□□□□□ -0.51
SYNE1-204ENST00000367248 ATP5C1P36542 298 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 BOP1Q14137 746 aaKnown RBP11.89□□□□□ -0.51
SYNE1-204ENST00000367248 HIST2H2ACQ16777 129 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms