RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TGFBR2P37173 567 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PURAQ00577 322 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ATP6AP1LQ52LC2 224 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 FAM98BQ52LJ0 330 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 IL31Q6EBC2 164 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PRMT9Q6P2P2 845 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ATG4AQ8WYN0 398 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF669Q96BR6 464 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 SPATA31A6Q5VVP1 1343 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 A0A0U1RQJ8 604 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 DARSP14868 501 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 MYL12AP19105 171 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 RAD23AP54725 363 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CCDC80Q76M96 950 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CBWD2Q8IUF1 395 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TNFRSF25Q93038 417 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 SH2D3AQ9BRG2 576 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CCDC130P13994 396 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 GSTT1P30711 240 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ARF5P84085 180 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 COL9A3Q14050 684 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CAMTA1Q9Y6Y1 1673 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TPRP12270 2363 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ASB14A6NK59 587 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 GAS2O43903 313 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 EPB42P16452 691 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CCNG2Q16589 344 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ATF7IP2Q5U623 682 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TYW3Q6IPR3 259 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TSEN2Q8NCE0 465 aaKnown RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 SYNPO2Q9UMS6 1093 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 DUSP12Q9UNI6 340 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 BTBD3Q9Y2F9 522 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 IDH3BO43837 385 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PTPN4P29074 926 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 MTTPP55157 894 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CDC42EP1Q00587 391 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TRIM32Q13049 653 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TMEM63BQ5T3F8 832 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 B3GNT6Q6ZMB0 384 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ENOPH1Q9UHY7 261 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PRR23AA6NEV1 266 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PROSCO94903 275 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 ARL4DP49703 201 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 AKR1D1P51857 326 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 HK2P52789 917 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 TRAF3Q13114 568 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 BAATQ14032 418 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-201ENST00000295550 NR1D2Q14995 579 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 LRRC6Q86X45 466 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 SVOPQ8N4V2 548 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 USP33Q8TEY7 942 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 DCLK3Q9C098 648 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 CST8O60676 142 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 IFNA14P01570 189 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 NPTX2P47972 431 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 EPC2Q52LR7 807 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 PIF1Q9H611 641 aa10.11□□□□□ -0.79
COL6A3-201ENST00000295550 RBAK-RBAKDNI3L0D1 243 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 BAIAP3O94812 1187 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ALOX15P16050 662 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NOS3P29474 1203 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 GSSP48637 474 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 TMEM26Q6ZUK4 368 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 C3orf67Q6ZVT6 689 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 VPS33AQ96AX1 596 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 TRMT6Q9UJA5 497 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 GNG14A0A1W2PPG7 69 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 DDHD2O94830 711 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CYP3A4P08684 503 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 RFX3P48380 749 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 RGS21Q2M5E4 152 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 MOSPD2Q8NHP6 518 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CHORDC1Q9UHD1 332 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CHKBQ9Y259 395 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NUP98P52948 1817 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NFICP08651 508 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 YWHAZP63104 245 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ZRANB3Q5FWF4 1079 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 DENND5BQ6ZUT9 1274 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 BAP1Q92560 729 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NRDE2Q9H7Z3 1164 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 SYNCRIPO60506 623 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ANXA11P50995 505 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CCNG1P51959 295 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 FUT2Q10981 343 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 PAFAH2Q99487 392 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NCF1BA6NI72 391 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NCF1CA8MVU1 366 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 LSM1O15116 133 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 FKBP6O75344 327 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NCF1P14598 390 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 WARSP23381 471 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CDC16Q13042 620 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CLVS1Q8IUQ0 354 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 NUP214P35658 2090 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 STIP1P31948 543 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 CCT8P50990 548 aa10.1□□□□□ -0.79
COL6A3-201ENST00000295550 SFSWAPQ12872 951 aaKnown RBP10.1□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF544Q6NX49 715 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms