RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PGM3O95394 542 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 UQCRBP14927 111 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 RAG1P15918 1043 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ITGAXP20702 1163 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 PROZP22891 400 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TCF7P36402 384 aaPredicted RBP12.79□□□□□ -0.36
NUP88-201ENST00000225696 CBLBQ13191 982 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 SLC9A4Q6AI14 798 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 CES3Q6UWW8 571 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ARCQ7LC44 396 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ADGRG6Q86SQ4 1221 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 WDR75Q8IWA0 830 aaKnown RBP12.79□□□□□ -0.36
NUP88-201ENST00000225696 SCUBE3Q8IX30 993 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 SLC16A10Q8TF71 515 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 KHSRPQ92945 711 aaKnown RBP eCLIP12.79□□□□□ -0.36
NUP88-201ENST00000225696 ANKRD36BP1Q96IX9 119 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 B3GNT5Q9BYG0 378 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 RNPEPQ9H4A4 650 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ZDHHC7Q9NXF8 308 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 APOBEC2Q9Y235 224 aaKnown RBP12.79□□□□□ -0.36
NUP88-201ENST00000225696 PCDHA11Q9Y5I1 949 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TRIP11Q15643 1979 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 CAPN8A6NHC0 703 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 GPR25O00155 361 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 GABBR2O75899 941 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 NCF2P19878 526 aaPredicted RBP12.79□□□□□ -0.36
NUP88-201ENST00000225696 BTKQ06187 659 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 CDK18Q07002 472 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 USP4Q13107 963 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 MED21Q13503 144 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TRIP10Q15642 601 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TBCCQ15814 346 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 STXBP2Q15833 593 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 WDR78Q5VTH9 848 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 AAGABQ6PD74 315 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ILDR2Q71H61 639 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TNS4Q8IZW8 715 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 EZH1Q92800 747 aaPredicted RBP12.79□□□□□ -0.36
NUP88-201ENST00000225696 NLRP4Q96MN2 994 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 LPIN3Q9BQK8 851 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 CEP41Q9BYV8 373 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 KLHL4Q9C0H6 718 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 R3HDMLQ9H3Y0 253 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ACAD9Q9H845 621 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 CLIC5Q9NZA1 410 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 TMEM216Q9P0N5 145 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 ADAMTS5Q9UNA0 930 aa12.79□□□□□ -0.36
NUP88-201ENST00000225696 LACTBL1A8MY62 500 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 DCXO43602 365 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 SERPINB6P35237 376 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 MSX2P35548 267 aaPredicted RBP12.78□□□□□ -0.36
NUP88-201ENST00000225696 GTF2A2P52657 109 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 EFNA5P52803 228 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 OLIG2Q13516 323 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 GK3PQ14409 553 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 ACAP1Q15027 740 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 LY6KQ17RY6 165 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 ATF7IP2Q5U623 682 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 JADE1Q6IE81 842 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 PMF1Q6P1K2 205 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 CASC4Q6P4E1 433 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 MPZL3Q6UWV2 235 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 MCUQ8NE86 351 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 B4GALNT2Q8NHY0 566 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 RAB3IL1Q8TBN0 382 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 AGR3Q8TD06 166 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 ACTRT2Q8TDY3 377 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 NMD3Q96D46 503 aaKnown RBP12.78□□□□□ -0.36
NUP88-201ENST00000225696 GCNAQ96QF7 691 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 HAPLN3Q96S86 360 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 PPP1R16BQ96T49 567 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 INO80BQ9C086 356 aaPredicted RBP12.78□□□□□ -0.36
NUP88-201ENST00000225696 XPNPEP3Q9NQH7 507 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 TSPAN16Q9UKR8 245 aa12.78□□□□□ -0.36
NUP88-201ENST00000225696 SF3B1O75533 1304 aaKnown RBP eCLIP12.78□□□□□ -0.369e-6■■■■■ 68.9
NUP88-201ENST00000225696 MYOCOSA0A1B0GUC4 107 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 TXNDC9O14530 226 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 PYGLP06737 847 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 NDST1P52848 882 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 HDAC4P56524 1084 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 LSAMPQ13449 338 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 GRM2Q14416 872 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 PDK3Q15120 406 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 TLR1Q15399 786 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 MMEL1Q495T6 779 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 BSPRYQ5W0U4 402 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 PDPK2PQ6A1A2 396 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 KCNT2Q6UVM3 1135 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 UGT2A3Q6UWM9 527 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 NAPRTQ6XQN6 538 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 TIFABQ6ZNK6 161 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 TSHZ1Q6ZSZ6 1077 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 SESTD1Q86VW0 696 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 NCAPG2Q86XI2 1143 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 MAPK15Q8TD08 544 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 NAT14Q8WUY8 206 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 PGBD4Q96DM1 585 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 TEX13BQ9BXU2 312 aa12.77□□□□□ -0.36
NUP88-201ENST00000225696 CDT1Q9H211 546 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms