RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PRPF6O94906 941 aaKnown RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 MPIG6BO95866 241 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 PRLP01236 227 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ICAM1P05362 532 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 APOA4P06727 396 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 C1QTNF9P0C862 333 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 CALM1P0DP23 149 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 CALM2P0DP24 149 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 CALM3P0DP25 149 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 MED14OSP0DP75 135 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 SNHG28P0DPA3 235 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 MYF5P13349 255 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 TSHRP16473 764 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ATF7P17544 494 aaPredicted RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 ALOX12P18054 663 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 EN2P19622 333 aaPredicted RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 PI3P19957 117 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 HSPA7P48741 367 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ALDH9A1P49189 494 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 GNAQP50148 359 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 TLE2Q04725 743 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ADCY2Q08462 1091 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 NECTIN1Q15223 517 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 PKN1Q16512 942 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 UAP1L1Q3KQV9 507 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ZNF385BQ569K4 471 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ZNF648Q5T619 568 aaPredicted RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 LRSAM1Q6UWE0 723 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 CATSPER4Q7RTX7 472 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 VSIG1Q86XK7 387 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 STPG3Q8N7X2 389 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ANKRD52Q8NB46 1076 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 REPS2Q8NFH8 660 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 U2AF1L4Q8WU68 220 aaKnown RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 TRIB2Q92519 343 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ATP2A3Q93084 1043 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 SPATA17Q96L03 361 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 C7orf26Q96N11 449 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 PWWP2AQ96N64 755 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 DEFB118Q96PH6 123 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 HTATIP2Q9BUP3 242 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 BTBD2Q9BX70 525 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 AMNQ9BXJ7 453 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ANO3Q9BYT9 981 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS53-212ENST00000572259 IL25Q9H293 177 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 RNF146Q9NTX7 359 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 PDRG1Q9NUG6 133 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 DACT1Q9NYF0 836 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 ADD3Q9UEY8 706 aaKnown RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 XPO7Q9UIA9 1087 aaKnown RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 SMG5Q9UPR3 1016 aaKnown RBP6.61□□□□□ -1.35
VPS53-212ENST00000572259 CNPY2Q9Y2B0 182 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 A0A0G2JMZ2 1700 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 POM121BA6NF01 834 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 ASB14A6NK59 587 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 KLRF2D3W0D1 207 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 DDX3XO00571 662 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS53-212ENST00000572259 CKMT1AP12532 417 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 KCNA2P16389 499 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 APEX1P27695 318 aaKnown RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 PSMA5P28066 241 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 SLC16A2P36021 539 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 MTNR1BP49286 362 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 GALNT1Q10472 559 aaPredicted RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 CDC16Q13042 620 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 PMS2P11Q13670 270 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 SCARB2Q14108 478 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 SSPNQ14714 243 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 CCL14Q16627 93 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 MPEG1Q2M385 716 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 MAP3K21Q5TCX8 1036 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 OGFOD2Q6N063 350 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 CYB5R4Q7L1T6 521 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 SDCCAG8Q86SQ7 713 aaPredicted RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 FAM129CQ86XR2 697 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 SIMC1Q8NDZ2 872 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 CTCFLQ8NI51 663 aaPredicted RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 SNX21Q969T3 373 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 NEK1Q96PY6 1258 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 LZTS2Q9BRK4 669 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 KATNAL1Q9BW62 490 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 TXLNGYQ9BZA5 131 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 OR10A5Q9H207 317 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 RANBP17Q9H2T7 1088 aaKnown RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 PNPLA8Q9NP80 782 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 MRPL11Q9Y3B7 192 aaKnown RBP6.6□□□□□ -1.35
VPS53-212ENST00000572259 CEP83Q9Y592 693 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 ZNF236Q9UL36 1845 aa6.6□□□□□ -1.35
VPS53-212ENST00000572259 ABCB11O95342 1321 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 WDR19Q8NEZ3 1342 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 A0A1W2PPH5 198 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 SYT5O00445 386 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 ACKR2O00590 384 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 SEPT4O43236 478 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 IL18BPO95998 194 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 PLA2G1BP04054 148 aaKnown RBP6.59□□□□□ -1.35
VPS53-212ENST00000572259 KRT1P04264 644 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 ALDH2P05091 517 aa6.59□□□□□ -1.35
VPS53-212ENST00000572259 PGK2P07205 417 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms