RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 LBHD1Q9BQE6 289 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 MLPHQ9BV36 600 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 KCTD10Q9H3F6 313 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 GOLPH3Q9H4A6 298 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 SMYD3Q9H7B4 428 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 EBF1Q9UH73 591 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 EVLQ9UI08 416 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 DBR1Q9UK59 544 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 SNX5Q9Y5X3 404 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 AP4B1Q9Y6B7 739 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 MYH4Q9Y623 1939 aa8.71□□□□□ -1.01
USP3-211ENST00000559257 ABCB11O95342 1321 aa8.71□□□□□ -1.01
USP3-211ENST00000559257 NRCAMQ92823 1304 aa8.71□□□□□ -1.01
USP3-211ENST00000559257 KIF13AQ9H1H9 1805 aa8.71□□□□□ -1.01
USP3-211ENST00000559257 NCAPD2Q15021 1401 aa8.71□□□□□ -1.01
USP3-211ENST00000559257 A0A1B0GWJ7 208 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 LRRC53A6NM62 1247 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 STX16-NPEPL1H3BU86 382 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 PLA2G6O60733 806 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 NDUFS2O75306 463 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 CLN5O75503 358 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 PIGNO95427 931 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 NMT1P30419 496 aaKnown RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 SERPINB1P30740 379 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 HOXA6P31267 233 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 ZNF76P36508 570 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 HPCAL1P37235 193 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 NPEPPSP55786 919 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 ACY1Q03154 408 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 CENPCQ03188 943 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 BAMBIQ13145 260 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 TRIP10Q15642 601 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 DLG2Q15700 870 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 NAB2Q15742 525 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 PDK4Q16654 411 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 ABCB5Q2M3G0 1257 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 ZC3H12BQ5HYM0 836 aaKnown RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 HGSNATQ68CP4 663 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 STYK1Q6J9G0 422 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 IYDQ6PHW0 289 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 IKBIPQ70UQ0 350 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 FKBP9P1Q75LS8 142 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 TRMT10CQ7L0Y3 403 aaKnown RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 RTL10Q7L3V2 364 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 KRT26Q7Z3Y9 468 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 USP37Q86T82 979 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 SETD3Q86TU7 594 aaPredicted RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 C12orf56Q8IXR9 622 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 LRRC47Q8N1G4 583 aaKnown RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 RASGEF1CQ8N431 466 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 RBM15BQ8NDT2 890 aaKnown RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 FIG4Q92562 907 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 PIK3R3Q92569 461 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 TMIGD2Q96BF3 282 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 B3GALT6Q96L58 329 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 GCNAQ96QF7 691 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 DCUN1D5Q9BTE7 237 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 CINPQ9BW66 212 aaPredicted RBP8.71□□□□□ -1.02
USP3-211ENST00000559257 C1orf21Q9H246 121 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 IL1RAPL2Q9NP60 686 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 NPAP1Q9NZP6 1156 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 AMACRQ9UHK6 382 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 LGALS13Q9UHV8 139 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 A0A1B0GUL6 1792 aa8.71□□□□□ -1.02
USP3-211ENST00000559257 LRRIQ4A6NIV6 560 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 C12orf71A8MTZ7 269 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 CLDN25C9JDP6 229 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 LAD1O00515 517 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 CCNT2O60583 730 aaKnown RBP8.7□□□□□ -1.02
USP3-211ENST00000559257 PALMO75781 387 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 ATE1O95260 518 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 ADAMTS2O95450 1211 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 H6PDO95479 791 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 SNAP29O95721 258 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 GH1P01241 217 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 GARTP22102 1010 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 VAMP1P23763 118 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 RBL1P28749 1068 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 HIRAP54198 1017 aaPredicted RBP8.7□□□□□ -1.02
USP3-211ENST00000559257 FAPQ12884 760 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 TRIM32Q13049 653 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 MPP2Q14168 576 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 RPS6KA1Q15418 735 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 INAVAQ3KP66 663 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 HYIQ5T013 277 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP3-211ENST00000559257 DRICH1Q6PGQ1 229 aaPredicted RBP8.7□□□□□ -1.02
USP3-211ENST00000559257 RNF111Q6ZNA4 994 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 DPH6Q7L8W6 267 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 TMPRSS9Q7Z410 1059 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 SH3RF1Q7Z6J0 888 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 ZNF589Q86UQ0 364 aaPredicted RBP8.7□□□□□ -1.02
USP3-211ENST00000559257 RIOX2Q8IUF8 465 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 BBS7Q8IWZ6 715 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 PALM2Q8IXS6 379 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 TBC1D21Q8IYX1 336 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 CPA6Q8N4T0 437 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 CCDC33Q8N5R6 958 aa8.7□□□□□ -1.02
USP3-211ENST00000559257 GOT1L1Q8NHS2 421 aaPredicted RBP8.7□□□□□ -1.02
USP3-211ENST00000559257 VANGL1Q8TAA9 524 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms