RNA–Protein interactions for RNA: ENST00000556958.5

ATXN3-245, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-245ENST00000556958 VPS4BO75351 444 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SEMA4FO95754 770 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 DDAH2O95865 285 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 ABL1P00519 1130 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 GP1BAP07359 652 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 THEGLP0DJG4 465 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 MBL2P11226 248 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 HARSP12081 509 aaKnown RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 CYP2F1P24903 491 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 COL8A1P27658 744 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 GRNP28799 593 aaKnown RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 DCTP40126 519 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SCTRP47872 440 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 CD97P48960 835 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 ATP1A2P50993 1020 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 HNRNPUQ00839 825 aaKnown RBP eCLIP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 PPP2R3AQ06190 1150 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 NAA30Q147X3 362 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 ISXQ2M1V0 245 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 C3orf38Q5JPI3 329 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SFMBT2Q5VUG0 894 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SPATA1Q5VX52 437 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 LAYNQ6UX15 382 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 NEK8Q86SG6 692 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 TMEM25Q86YD3 366 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 CCDC83Q8IWF9 413 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SCN4BQ8IWT1 228 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 FAM177A1Q8N128 213 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 DUSP9Q99956 384 aaKnown RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 KIFC3Q9BVG8 833 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 TARS2Q9BW92 718 aaKnown RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 RNF26Q9BY78 433 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-245ENST00000556958 RNF38Q9H0F5 515 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SGK2Q9HBY8 427 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 AASDHPPTQ9NRN7 309 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 DKK3Q9UBP4 350 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 TJP2Q9UDY2 1190 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 KCNG1Q9UIX4 513 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 VPS4AQ9UN37 437 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SATB2Q9UPW6 733 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 PLAAQ9Y263 795 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 SLCO1B1Q9Y6L6 691 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 ZFHX3Q15911 3703 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 KNL1Q8NG31 2342 aa6.11□□□□□ -1.43
ATXN3-245ENST00000556958 BOD1L1Q8NFC6 3051 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 LRBAP50851 2863 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 NF1P21359 2839 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 MYH9P35579 1960 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 A0A087WWV3 80 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 A0A1W2PPC4 97 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TTC26A0AVF1 554 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 ARHGEF35A5YM69 484 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 ZNF840PA6NDX5 716 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 PRRT4C9JH25 899 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SCAMP3O14828 347 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TRIM24O15164 1050 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CLDN3O15551 220 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SGSM2O43147 1006 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CACNG3O60359 315 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 MAGEC1O60732 1142 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TOM1L1O75674 476 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TNFSF15O95150 251 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 PROZP22891 400 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CD38P28907 300 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 ACSL1P33121 698 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 DGKGP49619 791 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CDH8P55286 799 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SNRPNP63162 240 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 ZBTB16Q05516 673 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SPAG1Q07617 926 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SFSWAPQ12872 951 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 BNIP3Q12983 259 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 STRN3Q13033 797 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 HDAC1Q13547 482 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SHBQ15464 509 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CFAP221Q4G0U5 840 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CRTC2Q53ET0 693 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 WSCD1Q658N2 575 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 MAMDC2Q7Z304 686 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 C14orf80Q86SX3 495 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CLEC14AQ86T13 490 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SPATA2LQ8IUW3 424 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 CD302Q8IX05 232 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SLC34A3Q8N130 599 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 STKLD1Q8NE28 680 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TPCN2Q8NHX9 752 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 WDR36Q8NI36 951 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 RNF217Q8TC41 542 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 MIB2Q96AX9 1013 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 FUBP3Q96I24 572 aaKnown RBP eCLIP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 SPATA17Q96L03 361 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 ACBD6Q9BR61 282 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 PYM1Q9BRP8 204 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 BBS2Q9BXC9 721 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 OSBPL2Q9H1P3 480 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 LHX5Q9H2C1 402 aa6.1□□□□□ -1.43
ATXN3-245ENST00000556958 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 THAP10Q9P2Z0 257 aaPredicted RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 TPX2Q9ULW0 747 aaKnown RBP6.1□□□□□ -1.43
ATXN3-245ENST00000556958 NCKAP1Q9Y2A7 1128 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms