RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 IRAK2O43187 625 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 TIMM44O43615 452 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 GABBR2O75899 941 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 LTFP02788 710 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 KRT5P13647 590 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 LCP1P13796 627 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 P2RY2P41231 377 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 ENPP2Q13822 863 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 MAN2A1Q16706 1144 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 TPD52L1Q16890 204 aaPredicted RBP12.36□□□□□ -0.43
VRK1-204ENST00000555351 MPPE1Q53F39 396 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 MPP7Q5T2T1 576 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 ADGRF1Q5T601 910 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 NUGGCQ68CJ6 796 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 PMS2CLQ68D20 193 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 DENND1CQ8IV53 801 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 ZNF606Q8WXB4 792 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 SHC3Q92529 594 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 SPACA7Q96KW9 195 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 SLC4A5Q9BY07 1137 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 ARRDC1-AS1Q9H2J1 176 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 HCN2Q9UL51 889 aa12.36□□□□□ -0.43
VRK1-204ENST00000555351 A0A1W2PQF6 199 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 BCLAF3A2AJT9 711 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 PRRT4C9JH25 899 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 SLC30A4O14863 429 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 HOXB2P14652 356 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 PON1P27169 355 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 GNA15P30679 374 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 MPLP40238 635 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 MTIF2P46199 727 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 RNF43Q68DV7 783 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 TOGARAM2Q6ZUX3 1019 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 DGLUCYQ7Z3D6 616 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 ANKS1BQ7Z6G8 1248 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 TMEM110Q86TL2 294 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 CHPFQ8IZ52 775 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 UCMAQ8WVF2 138 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 DDX1Q92499 740 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 NDRG1Q92597 394 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 EDEM1Q92611 657 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 PIWIL1Q96J94 861 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 CD248Q9HCU0 757 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.35□□□□□ -0.43
VRK1-204ENST00000555351 DMXL1Q9Y485 3027 aa12.35□□□□□ -0.43
VRK1-204ENST00000555351 RALGAPA1Q6GYQ0 2036 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 TCRBV21S2A2A0A5A6 115 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 ANTXRLA6NF34 631 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 TRIM24O15164 1050 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 ZNF217O75362 1048 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 LETM1O95202 739 aaPredicted RBP12.34□□□□□ -0.43
VRK1-204ENST00000555351 GLI1P08151 1106 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 HMBSP08397 361 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 SLC9A1P19634 815 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 HOXD12P35452 270 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 SLC11A2P49281 568 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 RGS7P49802 495 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 SNX16P57768 344 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 BPIFB4P59827 614 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 MAP7D1Q3KQU3 841 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 DPCR1Q3MIW9 517 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 EGFLAMQ63HQ2 1017 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 SLC36A4Q6YBV0 504 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 METTL3Q86U44 580 aaKnown RBP12.34□□□□□ -0.43
VRK1-204ENST00000555351 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.34□□□□□ -0.43
VRK1-204ENST00000555351 C12orf50Q8NA57 414 aaPredicted RBP12.34□□□□□ -0.43
VRK1-204ENST00000555351 WFIKKN2Q8TEU8 576 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 DDI1Q8WTU0 396 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 SERPINB11Q96P15 392 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 GBP4Q96PP9 640 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 DDX50Q9BQ39 737 aaKnown RBP12.34□□□□□ -0.43
VRK1-204ENST00000555351 CRACR2AQ9BSW2 395 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 TPSD1Q9BZJ3 242 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 LHX5Q9H2C1 402 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 NDST4Q9H3R1 872 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 LMBRD1Q9NUN5 540 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 BCCIPQ9P287 314 aaKnown RBP eCLIP12.34□□□□□ -0.43
VRK1-204ENST00000555351 THAP10Q9P2Z0 257 aaPredicted RBP12.34□□□□□ -0.43
VRK1-204ENST00000555351 PCDHGC3Q9UN70 934 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 TLR6Q9Y2C9 796 aa12.34□□□□□ -0.43
VRK1-204ENST00000555351 CEP250Q9BV73 2442 aa12.33□□□□□ -0.43
VRK1-204ENST00000555351 BECN2A8MW95 431 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 DCLK1O15075 740 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 THAP12O43422 761 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 FYNP06241 537 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 C7P10643 843 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 NCAM1P13591 858 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 GABRG2P18507 467 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 EEF1GP26641 437 aaKnown RBP12.33□□□□□ -0.44
VRK1-204ENST00000555351 HOXD9P28356 352 aaPredicted RBP12.33□□□□□ -0.44
VRK1-204ENST00000555351 GBP1P32455 592 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 ATXN1P54253 815 aaKnown RBP12.33□□□□□ -0.44
VRK1-204ENST00000555351 PTK2Q05397 1052 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 MTA1Q13330 715 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 VWA3BQ502W6 1294 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 RBM43Q6ZSC3 357 aaKnown RBP12.33□□□□□ -0.44
VRK1-204ENST00000555351 LPCAT2Q7L5N7 544 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 KIAA0907Q7Z7F0 614 aaPredicted RBP12.33□□□□□ -0.44
VRK1-204ENST00000555351 SCUBE3Q8IX30 993 aa12.33□□□□□ -0.44
VRK1-204ENST00000555351 IPO4Q8TEX9 1081 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms