RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RMND5AQ9H871 391 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ATP13A2Q9NQ11 1180 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF277Q9NRM2 450 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PPP1R1BQ9UD71 204 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 SOX13Q9UN79 622 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 MINPP1Q9UNW1 487 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 AP3M1Q9Y2T2 418 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PCDHGB3Q9Y5G1 929 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 COMMD10Q9Y6G5 202 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 SMCO2A6NFE2 343 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 B4E1Z4 1266 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 ATP6V1G2-DDX39BF2Z307 99 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 ACOX3O15254 700 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 PDE8BO95263 885 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CDH1P12830 882 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF182P17025 639 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 SLC9A3P48764 834 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 HK2P52789 917 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 MLLT10P55197 1068 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 RACK1P63244 317 aaKnown RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 SLC25A3Q00325 362 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 SNTA1Q13424 505 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 POU6F1Q14863 301 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CAVIN4Q5BKX8 364 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 STYK1Q6J9G0 422 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 METTL2BQ6P1Q9 378 aaKnown RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CYP20A1Q6UW02 462 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 KBTBD6Q86V97 674 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 RTKN2Q8IZC4 609 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 FBXL6Q8N531 539 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CCDC89Q8N998 374 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 TXNDC15Q96J42 360 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 PWWP2AQ96N64 755 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 YME1L1Q96TA2 773 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 POP1Q99575 1024 aaKnown RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 EMILIN2Q9BXX0 1053 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 INO80BQ9C086 356 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 ATP13A3Q9H7F0 1226 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CNNM2Q9H8M5 875 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 OSGEPQ9NPF4 335 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 SLC8A2Q9UPR5 921 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 UGT2A1Q9Y4X1 527 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 A0A1B0GUL6 1792 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CROCCQ5TZA2 2017 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 A0A0A6YYK5 440 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 TRIM64BA6NI03 449 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 POC1B-GALNT4F8VUJ3 575 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CTNNA2P26232 953 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 GCAP28676 217 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 KCNJ1P48048 391 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 TNNI2P48788 182 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CENPAP49450 140 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CENPCQ03188 943 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 IKQ13123 557 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 STAT4Q14765 748 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 RALGPS1Q5JS13 557 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CLVS2Q5SYC1 327 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 BNC2Q6ZN30 1099 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 METTL3Q86U44 580 aaKnown RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 CCDC105Q8IYK2 499 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 RASSF5Q8WWW0 418 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 FIG4Q92562 907 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 VPS33AQ96AX1 596 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 TM9SF2Q99805 663 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 NUDT12Q9BQG2 462 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 GCOM2Q9BZD3 368 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 DNAJC18Q9H819 358 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 MCM9Q9NXL9 1143 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 PPARGC1AQ9UBK2 798 aaKnown RBP9.75□□□□□ -0.85
CLIP1-214ENST00000540539 PSMD13Q9UNM6 376 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 POMPQ9Y244 141 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 MYRFQ9Y2G1 1151 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 MAU2Q9Y6X3 613 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 DLEC1Q9Y238 1755 aa9.75□□□□□ -0.85
CLIP1-214ENST00000540539 SLX4Q8IY92 1834 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 FAM237BA0A1B0GVD1 139 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF839A8K0R7 811 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SLC9A3R1O14745 358 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 NDUFS2O75306 463 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 DPEP1P16444 411 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 KRT15P19012 456 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ECE1P42892 770 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 HSPA13P48723 471 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 NPEPPSP55786 919 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TIMM10P62072 90 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 OTUD4Q01804 1114 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 FCHO2Q0JRZ9 810 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 TMEM67Q5HYA8 995 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 GPR107Q5VW38 600 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SH3BP5LQ7L8J4 393 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 PRPF39Q86UA1 669 aaKnown RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SLC51AQ86UW1 340 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 SNX29P2Q8IUI4 249 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ADGRG5Q8IZF4 528 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ANKRD53Q8N9V6 530 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF420Q8TAQ5 688 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-214ENST00000540539 HEMGNQ9BXL5 484 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 OR2B2Q9GZK3 357 aa9.74□□□□□ -0.85
CLIP1-214ENST00000540539 MKRN2Q9H000 416 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms