RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	PFKFB3	Q16875	520 aa	Predicted RBP	5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SYCP2L	Q5T4T6	812 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	ANO7	Q6IWH7	933 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	ACSM6	Q6P461	480 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SLC2A7	Q6PXP3	512 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	TOGARAM2	Q6ZUX3	1019 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	TTC30A	Q86WT1	665 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	CNGA4	Q8IV77	575 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SYTL1	Q8IYJ3	562 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	OR52L2P	Q8NGH6	319 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	GLMP	Q8WWB7	406 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SMG7	Q92540	1137 aa	Known RBP	5.42	□□□□□ -1.54
CD44-223	ENST00000526553	RPL36AL	Q969Q0	106 aa	Known RBP	5.42	□□□□□ -1.54
CD44-223	ENST00000526553	C18orf8	Q96DM3	657 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	EIF3C	Q99613	913 aa	Known RBP	5.42	□□□□□ -1.54
CD44-223	ENST00000526553	TTLL2	Q9BWV7	592 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	CHMP4A	Q9BY43	222 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SLC29A3	Q9BZD2	475 aa		5.42	□□□□□ -1.54
CD44-223	ENST00000526553	SIRT4	Q9Y6E7	314 aa	Predicted RBP	5.42	□□□□□ -1.54
CD44-223	ENST00000526553	CCDC187	A0A096LP49	1063 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	TTC34	A8MYJ7	566 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	KCNU1	A8MYU2	1149 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553		J3KTA2	159 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	NPPB	P16860	134 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	THBS4	P35443	961 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	TEC	P42680	631 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	ZNF81	P51508	661 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	GHRHR	Q02643	423 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	CFHR1	Q03591	330 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	KLF9	Q13886	244 aa	Predicted RBP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	KPNB1	Q14974	876 aa	Known RBP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	MSANTD2	Q6P1R3	559 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	PIGO	Q8TEQ8	1089 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	IPO4	Q8TEX9	1081 aa	Known RBP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	AKAP1	Q92667	903 aa	Known RBP eCLIP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	MUL1	Q969V5	352 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	P2RY11	Q96G91	374 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	ZNF778	Q96MU6	729 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	PAAF1	Q9BRP4	392 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	CDCP1	Q9H5V8	836 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	KCNK9	Q9NPC2	374 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	FSCN3	Q9NQT6	498 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	SLC52A1	Q9NWF4	448 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	VPS4A	Q9UN37	437 aa		5.41	□□□□□ -1.54
CD44-223	ENST00000526553	UBE2J1	Q9Y385	318 aa	Predicted RBP	5.41	□□□□□ -1.54
CD44-223	ENST00000526553	PNMA6E	A0A0J9YXQ4	647 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	NPC1	O15118	1278 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	SLC3A2	P08195	630 aa	Known RBP	5.4	□□□□□ -1.54
CD44-223	ENST00000526553	ITGA5	P08648	1049 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	NDUFS1	P28331	727 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	HSF1	Q00613	529 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	UBE4A	Q14139	1066 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	STARD3	Q14849	445 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	TRIP6	Q15654	476 aa	Known RBP	5.4	□□□□□ -1.54
CD44-223	ENST00000526553	FAM110C	Q1W6H9	321 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	TRIM71	Q2Q1W2	868 aa	Known RBP	5.4	□□□□□ -1.54
CD44-223	ENST00000526553	P3H1	Q32P28	736 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	C11orf87	Q6NUJ2	197 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	MORC1	Q86VD1	984 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	DENND1A	Q8TEH3	1009 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	PMM1	Q92871	262 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	CUL5	Q93034	780 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	ARL8B	Q9NVJ2	186 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	TUBA8	Q9NY65	449 aa	Predicted RBP	5.4	□□□□□ -1.54
CD44-223	ENST00000526553	IGSF9	Q9P2J2	1179 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	PI4KB	Q9UBF8	816 aa		5.4	□□□□□ -1.54
CD44-223	ENST00000526553	GOLGA6L3	A6NEY3	463 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	C16orf96	A6NNT2	1141 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	PRY	O14603	147 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	RRH	O14718	337 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	TP73	O15350	636 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	INPPL1	O15357	1258 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	TAF5L	O75529	589 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	TOP3B	O95985	862 aa	Known RBP	5.39	□□□□□ -1.55
CD44-223	ENST00000526553	ANXA6	P08133	673 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	SETSIP	P0DME0	302 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	ALAD	P13716	330 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	SERPINB3	P29508	390 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	MMP13	P45452	471 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	CBFB	Q13951	182 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	ZNF425	Q6IV72	752 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	DEF8	Q6ZN54	512 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	KRT27	Q7Z3Y8	459 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	UBE2Q1	Q7Z7E8	422 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	SKAP1	Q86WV1	359 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	PRSS3P2	Q8NHM4	247 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	SENP7	Q9BQF6	1050 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	POLR3GL	Q9BT43	218 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	FBXO28	Q9NVF7	368 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	RNF7	Q9UBF6	113 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553	CDC23	Q9UJX2	597 aa		5.39	□□□□□ -1.55
CD44-223	ENST00000526553		M0QZQ0	153 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	PIP5K1B	O14986	540 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	USP12	O75317	370 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	HOXD12	P35452	270 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	IL6ST	P40189	918 aa	Predicted RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	ALDH18A1	P54886	795 aa	Known RBP	5.38	□□□□□ -1.55
CD44-223	ENST00000526553	YPEL5	P62699	121 aa		5.38	□□□□□ -1.55
CD44-223	ENST00000526553	GAB1	Q13480	694 aa		5.38	□□□□□ -1.55

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