RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 MYMKA6NI61 221 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 VGLL3A8MV65 326 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 FOXN3O00409 490 aaPredicted RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 TCERG1O14776 1098 aaKnown RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 IKBKBO14920 756 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 KPNA5O15131 536 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 COQ9O75208 318 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 MBPP02686 304 aaPredicted RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 CALRP27797 417 aaKnown RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 THBS4P35443 961 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 PBX1P40424 430 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 CPA2P48052 419 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 TDO2P48775 406 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 WDR5P61964 334 aaKnown RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 HSF1Q00613 529 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 CALD1Q05682 793 aaKnown RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 ZNF543Q08ER8 600 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 ACOX1Q15067 660 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 SLC9C1Q4G0N8 1177 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 AASDHQ4L235 1098 aaPredicted RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 CRTC1Q6UUV9 634 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 ANKRD13BQ86YJ7 626 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 KRT78Q8N1N4 520 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 CCDC33Q8N5R6 958 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.76□□□□□ -1.97
CD44-216ENST00000525293 ATP11CQ8NB49 1132 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 ZNF548Q8NEK5 533 aaPredicted RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 TTC17Q96AE7 1141 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 WACQ9BTA9 647 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 SCNM1Q9BWG6 230 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 TM2D2Q9BX73 214 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 MLXIPLQ9NP71 852 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 GJB4Q9NTQ9 266 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 ARL8BQ9NVJ2 186 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 MAP3K20Q9NYL2 800 aaKnown RBP2.76□□□□□ -1.97
CD44-216ENST00000525293 SEMA5BQ9P283 1151 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 HEY2Q9UBP5 337 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 PCDHB2Q9Y5E7 798 aa2.76□□□□□ -1.97
CD44-216ENST00000525293 SPATA31A1Q5TZJ5 1347 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 POM121BA6NF01 834 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 C16orf96A6NNT2 1141 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 TRIM38O00635 465 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 RRHO14718 337 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 AREL1O15033 823 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 INPPL1O15357 1258 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 KCNAB3O43448 404 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 CCNT2O60583 730 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 EIF3JO75822 258 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 PLAUP00749 431 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 CD63P08962 238 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 SNHG28P0DPA3 235 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ARP10275 920 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 DRD1P21728 446 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ME1P48163 572 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 VPS41P49754 854 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 DGKQP52824 942 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 FOXG1P55316 489 aaPredicted RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 LINC00205P59089 165 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 RAE1P78406 368 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 NEXNQ0ZGT2 675 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 GPS1Q13098 491 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 MTA1Q13330 715 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 BFSP2Q13515 415 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 HDAC1Q13547 482 aaPredicted RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 KCNJ12Q14500 433 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 TWIST1Q15672 202 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 EARS2Q5JPH6 523 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 FAXCQ5TGI0 409 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ABLIM2Q6H8Q1 611 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 DEF8Q6ZN54 512 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 TFAP2DQ7Z6R9 452 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 UBE2Q1Q7Z7E8 422 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ANKRD23Q86SG2 305 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 PIP4P1Q86T03 277 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 DGKHQ86XP1 1220 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 CCDC150Q8NCX0 1101 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ABHD5Q8WTS1 349 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 IGFBPL1Q8WX77 278 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 TRMT61AQ96FX7 289 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 VCPIP1Q96JH7 1222 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 FCRL5Q96RD9 977 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 SENP7Q9BQF6 1050 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 ZBTB26Q9HCK0 441 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 AGO4Q9HCK5 861 aaKnown RBP2.75□□□□□ -1.97
CD44-216ENST00000525293 DDX21Q9NR30 783 aaKnown RBP eCLIP2.75□□□□□ -1.97
CD44-216ENST00000525293 ABHD10Q9NUJ1 306 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 POT1Q9NUX5 634 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 TMOD4Q9NZQ9 345 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 FAM50BQ9Y247 325 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 HS3ST3B1Q9Y662 390 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 LMTK3Q96Q04 1460 aa2.75□□□□□ -1.97
CD44-216ENST00000525293 C2CD4BA6NLJ0 364 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 H3BNX3 289 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 INSIG1O15503 277 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 ZSCAN9O15535 394 aaPredicted RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 CBFA2T3O75081 653 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 CNOT3O75175 753 aaKnown RBP2.74□□□□□ -1.97
CD44-216ENST00000525293 IGHDP01880 384 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 TGFB3P10600 412 aa2.74□□□□□ -1.97
CD44-216ENST00000525293 FGFR2P21802 821 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms