RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CCDC174Q6PII3 467 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 ZNF66Q6ZN08 573 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 NRSN1Q8IZ57 195 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 CACNA2D3Q8IZS8 1091 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 C8orf58Q8NAV2 365 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 PNISRQ8TF01 805 aaKnown RBP5.02□□□□□ -1.61
CD44-215ENST00000525241 SLC22A17Q8WUG5 538 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 EIF3CQ99613 913 aaKnown RBP5.02□□□□□ -1.61
CD44-215ENST00000525241 KATNAL1Q9BW62 490 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 PTPRHQ9HD43 1115 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 VPS4AQ9UN37 437 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 SPATA31A1Q5TZJ5 1347 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.01□□□□□ -1.61
CD44-215ENST00000525241 TRIM38O00635 465 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 CYP2D6P10635 497 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 FBLP22087 321 aaKnown RBP5.01□□□□□ -1.61
CD44-215ENST00000525241 DUSP1P28562 367 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 CD38P28907 300 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 TRAPPC10P48553 1259 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 WDR5P61964 334 aaKnown RBP5.01□□□□□ -1.61
CD44-215ENST00000525241 SLC10A2Q12908 348 aaPredicted RBP5.01□□□□□ -1.61
CD44-215ENST00000525241 SLC14A1Q13336 389 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 CERKLQ49MI3 558 aaPredicted RBP5.01□□□□□ -1.61
CD44-215ENST00000525241 LIN54Q6MZP7 749 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 RINT1Q6NUQ1 792 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 SYCE2Q6PIF2 218 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 VSTM1Q6UX27 236 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 C16orf89Q6UX73 402 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 RANBP10Q6VN20 620 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 TRABD2AQ86V40 505 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 OR52L2PQ8NGH6 319 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 ZNF398Q8TD17 642 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 WDR60Q8WVS4 1066 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 GLMPQ8WWB7 406 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 RSC1A1Q92681 617 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 HIC2Q96JB3 615 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 ADGRE3Q9BY15 652 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 CDCP1Q9H5V8 836 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 KCNK9Q9NPC2 374 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 DACT1Q9NYF0 836 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 PCDHB7Q9Y5E2 793 aa5.01□□□□□ -1.61
CD44-215ENST00000525241 LOC105369274A0A096LPK9 316 aa5□□□□□ -1.61
CD44-215ENST00000525241 LOC102723532A0A0G2JNH3 316 aa5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A18PA6NE21 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A16PA6NEW6 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 CGB1A6NKQ9 187 aa5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A9PA6NNJ1 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 C16orf96A6NNT2 1141 aa5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A5PA8MXJ8 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 TMEM232C9JQI7 657 aa5□□□□□ -1.61
CD44-215ENST00000525241 FCHO1O14526 889 aa5□□□□□ -1.61
CD44-215ENST00000525241 RPP40O75818 363 aaKnown RBP5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A15PP0C7V4 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 FAM90A14PP0C7W9 464 aa5□□□□□ -1.61
CD44-215ENST00000525241 GYS1P13807 737 aa5□□□□□ -1.61
CD44-215ENST00000525241 MATN1P21941 496 aa5□□□□□ -1.61
CD44-215ENST00000525241 CHKAP35790 457 aa5□□□□□ -1.61
CD44-215ENST00000525241 PNLIPRP1P54315 467 aa5□□□□□ -1.61
CD44-215ENST00000525241 FOXO1Q12778 655 aa5□□□□□ -1.61
CD44-215ENST00000525241 GAB1Q13480 694 aa5□□□□□ -1.61
CD44-215ENST00000525241 SEC23BQ15437 767 aa5□□□□□ -1.61
CD44-215ENST00000525241 TRIM60Q495X7 471 aa5□□□□□ -1.61
CD44-215ENST00000525241 DPY19L2P1Q6NXN4 242 aa5□□□□□ -1.61
CD44-215ENST00000525241 ERAP2Q6P179 960 aa5□□□□□ -1.61
CD44-215ENST00000525241 KYAT3Q6YP21 454 aaKnown RBP5□□□□□ -1.61
CD44-215ENST00000525241 KRT27Q7Z3Y8 459 aa5□□□□□ -1.61
CD44-215ENST00000525241 OR4N4Q8N0Y3 316 aa5□□□□□ -1.61
CD44-215ENST00000525241 STT3BQ8TCJ2 826 aa5□□□□□ -1.61
CD44-215ENST00000525241 NPIPB3Q92617 1050 aa5□□□□□ -1.61
CD44-215ENST00000525241 C5orf34Q96MH7 638 aa5□□□□□ -1.61
CD44-215ENST00000525241 MAGEH1Q9H213 219 aa5□□□□□ -1.61
CD44-215ENST00000525241 FBXO28Q9NVF7 368 aa5□□□□□ -1.61
CD44-215ENST00000525241 FLRT1Q9NZU1 646 aa5□□□□□ -1.61
CD44-215ENST00000525241 LRFN1Q9P244 771 aa5□□□□□ -1.61
CD44-215ENST00000525241 GRHPRQ9UBQ7 328 aa5□□□□□ -1.61
CD44-215ENST00000525241 UBE2J1Q9Y385 318 aaPredicted RBP5□□□□□ -1.61
CD44-215ENST00000525241 FNDC1Q4ZHG4 1894 aaPredicted RBP4.99□□□□□ -1.61
CD44-215ENST00000525241 KIF28PB7ZC32 967 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 M0QYT0 321 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 MASP2O00187 686 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 ITGA2BP08514 1039 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 SFPQP23246 707 aaKnown RBP eCLIP4.99□□□□□ -1.61
CD44-215ENST00000525241 AKT1P31749 480 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 C21orf58P58505 322 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 FOXF2Q12947 444 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 CEP78Q5JTW2 689 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 COLEC12Q5KU26 742 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 TANGO2Q6ICL3 276 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 ZNF813Q6ZN06 617 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 DDB2Q92466 427 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 EFHD1Q9BUP0 239 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 ELOVL1Q9BW60 279 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 RNF26Q9BY78 433 aaPredicted RBP4.99□□□□□ -1.61
CD44-215ENST00000525241 ADARB2Q9NS39 739 aaKnown RBP4.99□□□□□ -1.61
CD44-215ENST00000525241 HERC5Q9UII4 1024 aaKnown RBP4.99□□□□□ -1.61
CD44-215ENST00000525241 CNTN6Q9UQ52 1028 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 FRMD4BQ9Y2L6 1034 aa4.99□□□□□ -1.61
CD44-215ENST00000525241 ARHGEF17Q96PE2 2063 aaPredicted RBP4.99□□□□□ -1.61
CD44-215ENST00000525241 KAT6AQ92794 2004 aa4.98□□□□□ -1.61
CD44-215ENST00000525241 IFRD1O00458 451 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms