RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 IQCF1Q8N6M8 205 aa5.59□□□□□ -1.51
LINC01040-201ENST00000425048 MSI2Q96DH6 328 aaKnown RBP5.59□□□□□ -1.51
LINC01040-201ENST00000425048 RTFDC1Q9BY42 306 aaPredicted RBP5.59□□□□□ -1.51
LINC01040-201ENST00000425048 MYLK2Q9H1R3 596 aa5.59□□□□□ -1.51
LINC01040-201ENST00000425048 COL20A1Q9P218 1284 aa5.59□□□□□ -1.51
LINC01040-201ENST00000425048 AGO2Q9UKV8 859 aaKnown RBP5.59□□□□□ -1.51
LINC01040-201ENST00000425048 WDR47O94967 919 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 HOXB2P14652 356 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 IL1R1P14778 569 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 VPS41P49754 854 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 DGKQP52824 942 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 ZNF324BQ6AW86 544 aaPredicted RBP5.58□□□□□ -1.52
LINC01040-201ENST00000425048 OGDHLQ9ULD0 1010 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 VPS4AQ9UN37 437 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 HPSEQ9Y251 543 aa5.58□□□□□ -1.52
LINC01040-201ENST00000425048 NOP58Q9Y2X3 529 aaKnown RBP5.58□□□□□ -1.52
LINC01040-201ENST00000425048 ZNF335Q9H4Z2 1342 aaPredicted RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 ACOT8O14734 319 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 PRPF3O43395 683 aaKnown RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 ATG13O75143 517 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 PLA2G2AP14555 144 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 YY1P25490 414 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 DUSP1P28562 367 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 RAE1P78406 368 aaKnown RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 MTAPQ13126 283 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 UNC13DQ70J99 1090 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 MBD3L2Q8NHZ7 208 aaPredicted RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 CELF1Q92879 486 aaKnown RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 ATP2A3Q93084 1043 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 FAM227BQ96M60 508 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 SENP7Q9BQF6 1050 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 GATA5Q9BWX5 397 aaPredicted RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 RNF26Q9BY78 433 aaPredicted RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 RBM38Q9H0Z9 239 aaKnown RBP5.57□□□□□ -1.52
LINC01040-201ENST00000425048 ABHD10Q9NUJ1 306 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 MDFICQ9P1T7 246 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 PCDHA7Q9UN72 937 aa5.57□□□□□ -1.52
LINC01040-201ENST00000425048 TCF20Q9UGU0 1960 aaKnown RBP5.56□□□□□ -1.52
LINC01040-201ENST00000425048 HTR7P34969 479 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 HOXD12P35452 270 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 MLH1P40692 756 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 ACOX1Q15067 660 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 DLGAP5Q15398 846 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 SDR16C5Q8N3Y7 309 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 NUDCD2Q8WVJ2 157 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 KAT2BQ92831 832 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 RUNDC1Q96C34 613 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 SELENOOQ9BVL4 669 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 TTLL2Q9BWV7 592 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 CDH19Q9H159 772 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 ZNF287Q9HBT7 754 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 THSD1Q9NS62 852 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 TYW1Q9NV66 732 aaKnown RBP5.56□□□□□ -1.52
LINC01040-201ENST00000425048 ASNSD1Q9NWL6 643 aa5.56□□□□□ -1.52
LINC01040-201ENST00000425048 IPO11Q9UI26 975 aaKnown RBP5.56□□□□□ -1.52
LINC01040-201ENST00000425048 A0A0G2JK05 382 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 KIR2DS5A0A0G2JLQ3 304 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 KIR2DS3K7RE56 304 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 SLC3A2P08195 630 aaKnown RBP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 U2AF1L5P0DN76 240 aaPredicted RBP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 CARSP49589 748 aaKnown RBP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 CACNB3P54284 484 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 U2AF1Q01081 240 aaKnown RBP eCLIP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 KCNJ12Q14500 433 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 AASDHQ4L235 1098 aaPredicted RBP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 RFX6Q8HWS3 928 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 SUN3Q8TAQ9 357 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 MIB2Q96AX9 1013 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 SF3B5Q9BWJ5 86 aaKnown RBP5.55□□□□□ -1.52
LINC01040-201ENST00000425048 LRRC27Q9C0I9 530 aa5.55□□□□□ -1.52
LINC01040-201ENST00000425048 MAP4K4O95819 1239 aaPredicted RBP5.54□□□□□ -1.52
LINC01040-201ENST00000425048 FGF3P11487 239 aaPredicted RBP5.54□□□□□ -1.52
LINC01040-201ENST00000425048 FHL3Q13643 280 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 NFATC4Q14934 902 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 SMTNL2Q2TAL5 461 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 NUGGCQ68CJ6 796 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 SPATA2LQ8IUW3 424 aaPredicted RBP5.54□□□□□ -1.52
LINC01040-201ENST00000425048 AKAP1Q92667 903 aaKnown RBP eCLIP5.54□□□□□ -1.52
LINC01040-201ENST00000425048 NEUROG1Q92886 237 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 APIPQ96GX9 242 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 MED30Q96HR3 178 aa5.54□□□□□ -1.52
LINC01040-201ENST00000425048 SPATA31A5Q5VU36 1347 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 SPATA31A7Q8IWB4 1347 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 IFITM10A6NMD0 228 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 ERVV-2B6SEH9 535 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 PRYO14603 147 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 ENO1P06733 434 aaKnown RBP5.53□□□□□ -1.52
LINC01040-201ENST00000425048 SOX2P48431 317 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 LTBQ06643 244 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 PIK3CD-AS1Q5SR53 167 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 SESTD1Q86VW0 696 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 OIT3Q8WWZ8 545 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 LPAR1Q92633 364 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 GJA10Q969M2 543 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 LMLNQ96KR4 655 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 FAM204AQ9H8W3 233 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 C1orf112Q9NSG2 853 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 ZIM2Q9NZV7 527 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 ZNF212Q9UDV6 495 aa5.53□□□□□ -1.52
LINC01040-201ENST00000425048 PCDHB2Q9Y5E7 798 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms