RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 FOSL1P15407 271 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 PSMC3P17980 439 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 ITIH2P19823 946 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 RFX1P22670 979 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 GRK2P25098 689 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 RPL10P27635 214 aaKnown RBP12.22□□□□□ -0.45
SHMT2-201ENST00000328923 CACNB3P54284 484 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 ALDH18A1P54886 795 aaKnown RBP12.22□□□□□ -0.45
SHMT2-201ENST00000328923 UBAP2LQ14157 1087 aaKnown RBP12.22□□□□□ -0.45
SHMT2-201ENST00000328923 NPTX1Q15818 432 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 CCDC14Q49A88 953 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 DCAF17Q5H9S7 520 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-201ENST00000328923 HPS6Q86YV9 775 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 RTKN2Q8IZC4 609 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 GALNT6Q8NCL4 622 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 C1orf54Q8WWF1 131 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 DPF3Q92784 378 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 FERD3LQ96RJ6 166 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 LRRC19Q9H756 370 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 RIC8BQ9NVN3 520 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 PSME4Q14997 1843 aa12.22□□□□□ -0.45
SHMT2-201ENST00000328923 ATP2A1O14983 1001 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 PLS3P13797 630 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 IVDP26440 423 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 RFC1P35251 1148 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 OTUD4Q01804 1114 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 TUBA3CQ13748 450 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SIX1Q15475 284 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 NFE2Q16621 373 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 NFIL3Q16649 462 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 RARS2Q5T160 578 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ZNF618Q5T7W0 954 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ATAD3BQ5T9A4 648 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 KBTBD6Q86V97 674 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SNX29P2Q8IUI4 249 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ZNF784Q8NCA9 323 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 PIGSQ96S52 555 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 TDRD1Q9BXT4 1180 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SMARCAD1Q9H4L7 1026 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 CYP4F11Q9HBI6 524 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 EPS15L1Q9UBC2 864 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 DNMT3BQ9UBC3 853 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 KCNN3Q9UGI6 736 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ANAPC5Q9UJX4 755 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 COG5Q9UP83 839 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SNED1Q8TER0 1413 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 PPEF1O14829 653 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 JRKO75564 520 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 NR3C1P04150 777 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 DLATP10515 647 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 GRM5P41594 1212 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 MLLT3P42568 568 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SLC12A3P55017 1021 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 GNG2P59768 71 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 PPP4CP60510 307 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 DNASE1L3Q13609 305 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ZBED5Q49AG3 693 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 TUBA3EQ6PEY2 450 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 GALNT7Q86SF2 657 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 SLC13A5Q86YT5 568 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 TCP10LQ8TDR4 215 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 TP53INP1Q96A56 240 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 MAP6Q96JE9 813 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 CCDC106Q9BWC9 280 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 NAA50Q9GZZ1 169 aaKnown RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 THAP2Q9H0W7 228 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 C1orf21Q9H246 121 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 RUBCNLQ9H714 662 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 ABI2Q9NYB9 513 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-201ENST00000328923 GMIPQ9P107 970 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 PCDHA12Q9UN75 941 aa12.21□□□□□ -0.45
SHMT2-201ENST00000328923 E9PMD0 336 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 H3BNH8 94 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 GOLGA8RI6L899 631 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 DYNC1LI2O43237 492 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 TGDSO95455 350 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 EIF2AK2P19525 551 aaKnown RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 BGNP21810 368 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 POLR2BP30876 1174 aaKnown RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 MAN1A1P33908 653 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 NOVP48745 357 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 ATP6V0D1P61421 351 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 UBE2SQ16763 222 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 INAVAQ3KP66 663 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 GPR107Q5VW38 600 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 ZNF746Q6NUN9 644 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 DCP2Q8IU60 420 aaKnown RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 RELL1Q8IUW5 271 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 CHERPQ8IWX8 916 aaKnown RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 SP8Q8IXZ3 490 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 NLRP7Q8WX94 980 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 DYNLL2Q96FJ2 89 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 KLF6Q99612 283 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-201ENST00000328923 XPNPEP1Q9NQW7 623 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 ARMC1Q9NVT9 282 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 CDH22Q9UJ99 828 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 PSMD13Q9UNM6 376 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 KIAA1024Q9UPX6 916 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 RWDD3Q9Y3V2 267 aa12.2□□□□□ -0.46
SHMT2-201ENST00000328923 TRAF6Q9Y4K3 522 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms