RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Sh3bp2Q06649 559 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Mif4gdQ3UBZ5 222 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Tmed1Q3V009 227 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Trim24Q64127 1051 aaKnown RBP16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 FAM120AQ6A0A9 1112 aaKnown RBP16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Chsy1Q6ZQ11 800 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Mettl24Q8CCB5 363 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Nudt13Q8JZU0 352 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Olfr356Q8VFP5 315 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Atp6v1g1Q9CR51 118 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Wars2Q9CYK1 360 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Tpd52l2Q9CYZ2 220 aaKnown RBP16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 TtpalQ9D3D0 343 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 4930513O06RikQ9D549 161 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Dach1Q9QYB2 751 aa16.71■□□□□ 0.27
Trim28-201ENSMUST00000005705 Bclaf3A2AG58 752 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Cyp4f17G3UW78 524 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Tgfb2P27090 414 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Casp2P29594 452 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Rab17P35292 214 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Ythdf1P59326 559 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Tbx3P70324 741 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Serpina1eQ00898 413 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Slc38a5Q3U1J0 479 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Trappc3lQ4KL14 181 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Grid2Q61625 1007 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Slc26a2Q62273 739 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Dcaf15Q6PFH3 600 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Trub1Q8C0D0 338 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Olfr393Q8VGR6 312 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Stk33Q924X7 491 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Cyp4f16Q99N17 524 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Clic3Q9D7P7 237 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Cpsf3Q9QXK7 684 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Cry2Q9R194 592 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Hcn4O70507 1186 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Arf4P61750 180 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Slc38a7Q8BWH0 463 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Fcho1Q8K285 873 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Sh3kbp1Q8R550 709 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Nmd3Q99L48 503 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Chst12Q99LL3 419 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Isl2Q9CXV0 359 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Tubgcp4Q9D4F8 667 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Ropn1Q9ESG2 212 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Anxa9Q9JHQ0 345 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Gm3264L7N2C5 238 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Pld5Q3UNN8 536 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Itga1Q3V3R4 1179 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Exoc3l1Q8BI71 739 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Atg16l1Q8C0J2 607 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 CmasQ99KK2 432 aaKnown RBP16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 MycsQ9Z304 431 aa16.7■□□□□ 0.26
Trim28-201ENSMUST00000005705 Fndc3c1Q6DFV6 1356 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Polr2aP08775 1970 aaKnown RBP16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Pex10B1AUE5 324 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 EsrraO08580 422 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 YwhazP63101 245 aaKnown RBP16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Gm1604bQ3TRG0 118 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Zfp759Q7M6X3 721 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 C6.1alQ7M757 291 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Lrrc27Q80YS5 523 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Fbxo44Q8BK26 255 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Trim61Q8JZK6 461 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Itgbl1Q8VDV0 494 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Hdhd5Q91WM2 419 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Dclre1aQ9JIC3 1026 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 PigqQ9QYT7 581 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Pck1Q9Z2V4 622 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 SisF8VQM5 1818 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Gm6370A0A0G2JGX9 315 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Armt1A6H630 439 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Gm6309L7N481 315 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Plk2P53351 682 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 PolgP54099 1218 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Papss1Q60967 624 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Znf821Q6PD05 413 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Pum3Q8BKS9 647 aaKnown RBP16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 TdrpQ8C5P7 182 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 TgdsQ8VDR7 355 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Pcdha3Q91Y16 942 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Trim8Q99PJ2 551 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Vta1Q9CR26 309 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 QpctQ9CYK2 362 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Dcaf6Q9DC22 876 aa16.69■□□□□ 0.26
Trim28-201ENSMUST00000005705 Serpinb3aG3X9V8 387 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 CenpaO35216 134 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Nr3c1P06537 783 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Matn1P51942 500 aaKnown RBP16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Ly9Q01965 654 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Eif4bQ8BGD9 611 aaKnown RBP16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Gabra5Q8BHJ7 463 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Ecrg4Q99LS0 148 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 StambpQ9CQ26 424 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Med21Q9CQ39 144 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Wfdc1Q9ESH5 211 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Hey2Q9QUS4 339 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 NumbQ9QZS3 653 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 Tk2Q9R088 270 aa16.68■□□□□ 0.26
Trim28-201ENSMUST00000005705 PatjQ63ZW7 1834 aa16.68■□□□□ 0.26
Retrieved 100 of 22,080 RNA–protein pairs in 21.1 ms