RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 NNTQ13423 1086 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 PPIGQ13427 754 aaKnown RBP eCLIP17.53■□□□□ 0.46e-7■□□□□ 10.9
CLN3-252ENST00000636907 TRIP13Q15645 432 aaPredicted RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 BTBD8Q5XKL5 378 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 SLC8B1Q6J4K2 584 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 NPNTQ6UXI9 565 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 ZNF365Q70YC5 407 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 TAC4Q86UU9 113 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 PSTKQ8IV42 348 aaKnown RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 GPR152Q8TDT2 470 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 DQX1Q8TE96 717 aaKnown RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 C2orf15Q8WU43 125 aaKnown RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 TMEM169Q96HH4 297 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 SLC9A7Q96T83 725 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 SEPT5Q99719 369 aaPredicted RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 TRIM62Q9BVG3 475 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 FRMD8P1Q9BZ68 369 aaPredicted RBP17.53■□□□□ 0.4
CLN3-252ENST00000636907 NMUR1Q9HB89 426 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 ABCC13Q9NSE7 274 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 ZDHHC18Q9NUE0 388 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 PRKAG2Q9UGJ0 569 aa17.53■□□□□ 0.4
CLN3-252ENST00000636907 A0A1W2PQH9 124 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 WDR27A2RRH5 827 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 C2CD2LO14523 706 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 FGBP02675 491 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 LMNB2Q03252 620 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 DUSP4Q13115 394 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 MGAT5BQ3V5L5 792 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 SLC9A4Q6AI14 798 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 KIAA1841Q6NSI8 718 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 ZDHHC24Q6UX98 284 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 GSTA5Q7RTV2 222 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 ALLCQ8N6M5 410 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 PLD5Q8N7P1 536 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 NTAN1Q96AB6 310 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 HERC2P3Q9BVR0 1158 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 PRDM10Q9NQV6 1147 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 ANLNQ9NQW6 1124 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.52■□□□□ 0.4
CLN3-252ENST00000636907 IL37Q9NZH6 218 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 ASIC3Q9UHC3 531 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 SCML2Q9UQR0 700 aa17.52■□□□□ 0.4
CLN3-252ENST00000636907 PLXNA3P51805 1871 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 APOL1O14791 398 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 F9P00740 461 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 KRT14P02533 472 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 ITGAVP06756 1048 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 OR1D2P34982 312 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 PLTPP55058 493 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 DSG1Q02413 1049 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 FPGSQ05932 587 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 DENND5BQ6ZUT9 1274 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 PRUNE1Q86TP1 453 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 CSPG4P5Q96PW8 444 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 FBXO44Q9H4M3 255 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 SPG21Q9NZD8 308 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 CWC15Q9P013 229 aaKnown RBP17.52■□□□□ 0.39
CLN3-252ENST00000636907 FBXW11Q9UKB1 542 aa17.52■□□□□ 0.39
CLN3-252ENST00000636907 I6L893 689 aaPredicted RBP17.51■□□□□ 0.39
CLN3-252ENST00000636907 IGLV3-25P01717 112 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 GOT1P17174 413 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 TGM2P21980 687 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 IVDP26440 423 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 KLRC2P26717 231 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 GBP1P32455 592 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 ADRA1BP35368 520 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 CXCR3P49682 368 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 AIF1P55008 147 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 EIF3EP60228 445 aaKnown RBP17.51■□□□□ 0.39
CLN3-252ENST00000636907 NOMO1Q15155 1222 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 EFHC2Q5JST6 749 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 C1orf228Q6PIY5 440 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 GLIS1Q8NBF1 620 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 SPATA17Q96L03 361 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 CLSTN3Q9BQT9 956 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 TMEM121Q9BTD3 319 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 C10orf88Q9H8K7 445 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 OSER1Q9NX31 292 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 HPCAL4Q9UM19 191 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 KIAA1671Q9BY89 1806 aa17.51■□□□□ 0.39
CLN3-252ENST00000636907 FAM92AA1XBS5 289 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 MCF2LO15068 1137 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 GLUD2P49448 558 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 VPS41P49754 854 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 SCAPQ12770 1279 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 DDX53Q86TM3 631 aaKnown RBP17.5■□□□□ 0.39
CLN3-252ENST00000636907 MON1AQ86VX9 555 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 TSEN2Q8NCE0 465 aaKnown RBP17.5■□□□□ 0.39
CLN3-252ENST00000636907 FBXO25Q8TCJ0 367 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 P3H4Q92791 437 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 FMO2Q99518 471 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 FAM53CQ9NYF3 392 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 GMIPQ9P107 970 aa17.5■□□□□ 0.39
CLN3-252ENST00000636907 RTN3O95197 1032 aaPredicted RBP17.49■□□□□ 0.39
CLN3-252ENST00000636907 GJB5O95377 273 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 ETS1P14921 441 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 ATF2P15336 505 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 YWHAQP27348 245 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 ARL4AP40617 200 aa17.49■□□□□ 0.39
CLN3-252ENST00000636907 RPL10AP62906 217 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms