RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 DCDC5Q6ZRR9 648 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 PIK3AP1Q6ZUJ8 805 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 CLASRPQ8N2M8 674 aaKnown RBP6.15□□□□□ -1.42
NUP88-213ENST00000576862 FAM71DQ8N9W8 422 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 ZNF398Q8TD17 642 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 VOPP1Q96AW1 172 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 TMEM41AQ96HV5 264 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 C5orf34Q96MH7 638 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 NUDT22Q9BRQ3 303 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 RXFP3Q9NSD7 469 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 CA14Q9ULX7 337 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 PCDHB2Q9Y5E7 798 aa6.15□□□□□ -1.42
NUP88-213ENST00000576862 PCDH17O14917 1159 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 USP1O94782 785 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 SETSIPP0DME0 302 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 SRGAP2BP0DMP2 458 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 RAE1P78406 368 aaKnown RBP6.14□□□□□ -1.43
NUP88-213ENST00000576862 SEC23BQ15437 767 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 CERKLQ49MI3 558 aaPredicted RBP6.14□□□□□ -1.43
NUP88-213ENST00000576862 C4orf46Q504U0 113 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 TMEM63BQ5T3F8 832 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 ARL6IP4Q66PJ3 421 aaKnown RBP6.14□□□□□ -1.43
NUP88-213ENST00000576862 SH2D3AQ9BRG2 576 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 CINPQ9BW66 212 aaPredicted RBP6.14□□□□□ -1.43
NUP88-213ENST00000576862 WDR12Q9GZL7 423 aaKnown RBP6.14□□□□□ -1.43
NUP88-213ENST00000576862 ARFGAP3Q9NP61 516 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 PDGFCQ9NRA1 345 aa6.14□□□□□ -1.43
NUP88-213ENST00000576862 ABHD14A-ACY1A0A1B0GW23 586 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 J3KTA2 159 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 M0QZQ0 153 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 PIP5K1BO14986 540 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 NTSR2O95665 410 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 TUBB4AP04350 444 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 EPHB2P29323 1055 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 TECP42680 631 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 SLC14A1Q13336 389 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 BFSP2Q13515 415 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 RASGRP3Q8IV61 690 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 MUL1Q969V5 352 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 HS6ST2Q96MM7 605 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 EFHD1Q9BUP0 239 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 QTRT1Q9BXR0 403 aaKnown RBP6.13□□□□□ -1.43
NUP88-213ENST00000576862 SEMA4CQ9C0C4 833 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 PCSK5Q92824 1860 aa6.13□□□□□ -1.43
NUP88-213ENST00000576862 TMEM232C9JQI7 657 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 PPP6CO00743 305 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 CTIFO43310 598 aaKnown RBP6.12□□□□□ -1.43
NUP88-213ENST00000576862 TAF5LO75529 589 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 GLP2RO95838 553 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 COL3A1P02461 1466 aaPredicted RBP6.12□□□□□ -1.43
NUP88-213ENST00000576862 CERS1P27544 350 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 STARD3Q14849 445 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 SPATA31A1Q5TZJ5 1347 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 CCDC144NLQ6NUI1 221 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 MSANTD2Q6P1R3 559 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 RANBP10Q6VN20 620 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 SPICE1Q8N0Z3 855 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 SAMD3Q8N6K7 520 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 OVCA2Q8WZ82 227 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 EPS8L2Q9H6S3 715 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 HELLSQ9NRZ9 838 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 ABHD10Q9NUJ1 306 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 VPS4AQ9UN37 437 aa6.12□□□□□ -1.43
NUP88-213ENST00000576862 WDR17Q8IZU2 1322 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 A0A087WV62 115 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 CCDC187A0A096LP49 1063 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.11□□□□□ -1.43
NUP88-213ENST00000576862 AQP12BA6NM10 295 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 C16orf96A6NNT2 1141 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 ALADP13716 330 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 JAK3P52333 1124 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 RHBDL3P58872 404 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 SSBP2P81877 361 aaPredicted RBP6.11□□□□□ -1.43
NUP88-213ENST00000576862 SEMA3BQ13214 749 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 GAB1Q13480 694 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 GRM4Q14833 912 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 SUPT20HL1Q3ZLR7 823 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 KIAA1614Q5VZ46 1190 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 VSTM1Q6UX27 236 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 ZNF813Q6ZN06 617 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 YTHDF3Q7Z739 585 aaKnown RBP6.11□□□□□ -1.43
NUP88-213ENST00000576862 NEK8Q86SG6 692 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 GALNT16Q8N428 558 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 HIC2Q96JB3 615 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 MPHOSPH6Q99547 160 aaKnown RBP6.11□□□□□ -1.43
NUP88-213ENST00000576862 TAGLN3Q9UI15 199 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 DAAM1Q9Y4D1 1078 aa6.11□□□□□ -1.43
NUP88-213ENST00000576862 SMIM35A0A1B0GVV1 85 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 GXYLT2A0PJZ3 443 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 GOLGA6L3A6NEY3 463 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 ANXA6P08133 673 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 ITGA5P08648 1049 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 PRR35P0CG20 571 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 NPPBP16860 134 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 SFPQP23246 707 aaKnown RBP eCLIP6.1□□□□□ -1.43
NUP88-213ENST00000576862 IGHMBP2P38935 993 aaKnown RBP6.1□□□□□ -1.43
NUP88-213ENST00000576862 GSTM5P46439 218 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 WDR5P61964 334 aaKnown RBP6.1□□□□□ -1.43
NUP88-213ENST00000576862 BRD3Q15059 726 aa6.1□□□□□ -1.43
NUP88-213ENST00000576862 MEX3CQ5U5Q3 659 aaKnown RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms