RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MIIPQ5JXC2 388 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 EOGTQ5NDL2 527 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 HEATR6Q6AI08 1181 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 GRAMD4Q6IC98 578 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 C11orf74Q86VG3 221 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 SFTPA1Q8IWL2 248 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 RNF139Q8WU17 664 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 HHIPQ96QV1 700 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 CRACR2AQ9BSW2 395 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 TRIM62Q9BVG3 475 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 NDST4Q9H3R1 872 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 SIX2Q9NPC8 291 aa16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 DNAJC17Q9NVM6 304 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 AGO1Q9UL18 857 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-209ENST00000554872 EML5Q05BV3 1969 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC12A8A0AV02 714 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 BECN2A8MW95 431 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 GFRA2O00451 464 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 FOXD2O60548 495 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 KRT5P13647 590 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 EEF1GP26641 437 aaKnown RBP16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 HOXC13P31276 330 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 SEC13P55735 322 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 KDSRQ06136 332 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 RING1Q06587 406 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 VWA3BQ502W6 1294 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 C2orf27AQ580R0 203 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 FYB2Q5VWT5 728 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 CACNA2D4Q7Z3S7 1137 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 FMNL3Q8IVF7 1028 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 TSTD1Q8NFU3 115 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 ENOX1Q8TC92 643 aaKnown RBP16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 GPT2Q8TD30 523 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 ZNF606Q8WXB4 792 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 HINFPQ9BQA5 517 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 TUBGCP2Q9BSJ2 902 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC4A5Q9BY07 1137 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 SLC2A11Q9BYW1 496 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 PCDHGC3Q9UN70 934 aa16.77■□□□□ 0.28
CCDC88C-209ENST00000554872 ATG2BQ96BY7 2078 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 TBC1D3BA6NDS4 549 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 GOLGA6L22H0YM25 854 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 ADAM23O75077 832 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 ALDH1A2O94788 518 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 LTFP02788 710 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 CISD3P0C7P0 127 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 LCP1P13796 627 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 GNA15P30679 374 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 HARS2P49590 506 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 RGS7P49802 495 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 SRSF5Q13243 272 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 RNF43Q68DV7 783 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 DPY19L2P1Q6NXN4 242 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 PRR23BQ6ZRT6 265 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 TPGS1Q6ZTW0 290 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 CEP68Q76N32 757 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 TMEM110Q86TL2 294 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 DCLK2Q8N568 766 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 FAM160A2Q8N612 972 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 ALLCQ8N6M5 410 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 NAT16Q8N8M0 369 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 NDRG1Q92597 394 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 GOLGA1Q92805 767 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 AZIN2Q96A70 460 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 PCDHGA5Q9Y5G8 931 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 CACNA1AO00555 2505 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 CEP250Q9BV73 2442 aa16.76■□□□□ 0.27
CCDC88C-209ENST00000554872 SGK1O00141 431 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 NPC1O15118 1278 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 KLF8O95600 359 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 HNRNPLP14866 589 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 DGKGP49619 791 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 LMNB2Q03252 620 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 E2F5Q15329 346 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 TCP11X2Q5H9J9 407 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 C10orf76Q5T2E6 689 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 DENND1BQ6P3S1 775 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 GJB7Q6PEY0 223 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 TMEM92Q6UXU6 159 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 DENND1CQ8IV53 801 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 ZNF513Q8N8E2 541 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 TXNDC5Q8NBS9 432 aaKnown RBP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 OLIG1Q8TAK6 271 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 EDEM1Q92611 657 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 P2RY11Q96G91 374 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 LHX5Q9H2C1 402 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 POLR3BQ9NW08 1133 aaPredicted RBP16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 HCN2Q9UL51 889 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 SPAG17Q6Q759 2223 aa16.75■□□□□ 0.27
CCDC88C-209ENST00000554872 PLXND1Q9Y4D7 1925 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 KCNJ18B7U540 433 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 THAP12O43422 761 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 LETM1O95202 739 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 EPN2O95208 641 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 MBD3O95983 291 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CYBBP04839 570 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 FYNP06241 537 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 SDHBP21912 280 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 NTSR1P30989 418 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms