RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNF606Q8WXB4 792 aa21.56■■□□□ 1.04
VPS28-206ENST00000526734 LRP3O75074 770 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 RPP40O75818 363 aaKnown RBP21.55■■□□□ 1.04
VPS28-206ENST00000526734 PENKP01210 267 aaPredicted RBP21.55■■□□□ 1.04
VPS28-206ENST00000526734 HMBSP08397 361 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 E2F5Q15329 346 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 ARHGAP44Q17R89 818 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 TPGS1Q6ZTW0 290 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 BEND5Q7L4P6 421 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 FMNL3Q8IVF7 1028 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 FAM217AQ8IXS0 508 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 NAT16Q8N8M0 369 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 HHIPQ96QV1 700 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 IRX2Q9BZI1 471 aaPredicted RBP21.55■■□□□ 1.04
VPS28-206ENST00000526734 AGO1Q9UL18 857 aaKnown RBP21.55■■□□□ 1.04
VPS28-206ENST00000526734 STARD13Q9Y3M8 1113 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 NFE2L3Q9Y4A8 694 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 KIAA1549LQ6ZVL6 1849 aa21.55■■□□□ 1.04
VPS28-206ENST00000526734 BECN2A8MW95 431 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 ALDH1A2O94788 518 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 RETP07949 1114 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 CHRM1P11229 460 aaPredicted RBP21.54■■□□□ 1.04
VPS28-206ENST00000526734 DGKGP49619 791 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 PTK2Q05397 1052 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 CRY1Q16526 586 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 TCP11X2Q5H9J9 407 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 MIIPQ5JXC2 388 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 C10orf76Q5T2E6 689 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 GJB7Q6PEY0 223 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 SASS6Q6UVJ0 657 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.54■■□□□ 1.04
VPS28-206ENST00000526734 C11orf74Q86VG3 221 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 IL17RCQ8NAC3 791 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 NDRG1Q92597 394 aaKnown RBP21.54■■□□□ 1.04
VPS28-206ENST00000526734 EDEM1Q92611 657 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 SLC4A5Q9BY07 1137 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 POLMQ9NP87 494 aaPredicted RBP21.54■■□□□ 1.04
VPS28-206ENST00000526734 SIX2Q9NPC8 291 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 ANO10Q9NW15 660 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 FBXO10Q9UK96 956 aa21.54■■□□□ 1.04
VPS28-206ENST00000526734 GABBR2O75899 941 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 KLF8O95600 359 aaPredicted RBP21.53■■□□□ 1.04
VPS28-206ENST00000526734 TPM2P07951 284 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 TIE1P35590 1138 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 USP8P40818 1118 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 BPIFB4P59827 614 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 RING1Q06587 406 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 MESP2Q0VG99 397 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 NNTQ13423 1086 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 NUGGCQ68CJ6 796 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 DENND1BQ6P3S1 775 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 CACNA2D4Q7Z3S7 1137 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 RASSF3Q86WH2 238 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 DENND1CQ8IV53 801 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 ALLCQ8N6M5 410 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 ZNF513Q8N8E2 541 aaPredicted RBP21.53■■□□□ 1.04
VPS28-206ENST00000526734 LOXL4Q96JB6 756 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 ST7Q9NRC1 585 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 STOML2Q9UJZ1 356 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 DNAJC12Q9UKB3 198 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 PCDHGC3Q9UN70 934 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 SLC27A6Q9Y2P4 619 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 GPR179Q6PRD1 2367 aa21.53■■□□□ 1.04
VPS28-206ENST00000526734 EP300Q09472 2414 aaPredicted RBP21.53■■□□□ 1.04
VPS28-206ENST00000526734 USP34Q70CQ2 3546 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 VPS13AQ96RL7 3174 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 PES1O00541 588 aaKnown RBP21.52■■□□□ 1.04
VPS28-206ENST00000526734 FOXD2O60548 495 aaPredicted RBP21.52■■□□□ 1.04
VPS28-206ENST00000526734 CALCAP01258 141 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 PXNP49023 591 aaPredicted RBP21.52■■□□□ 1.04
VPS28-206ENST00000526734 SNX16P57768 344 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 STX1AQ16623 288 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 CCDC183Q5T5S1 534 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 TMEM110Q86TL2 294 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 UNC45BQ8IWX7 931 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 CCDC33Q8N5R6 958 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 TXNDC5Q8NBS9 432 aaKnown RBP21.52■■□□□ 1.04
VPS28-206ENST00000526734 NOX5Q96PH1 765 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 SLC2A11Q9BYW1 496 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 MIS12Q9H081 205 aa21.52■■□□□ 1.04
VPS28-206ENST00000526734 SAMSN1Q9NSI8 373 aaKnown RBP21.52■■□□□ 1.04
VPS28-206ENST00000526734 MYO15AQ9UKN7 3530 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 SRSF5Q13243 272 aaKnown RBP21.51■■□□□ 1.03
VPS28-206ENST00000526734 MPPE1Q53F39 396 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 CDKAL1Q5VV42 579 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 FYB2Q5VWT5 728 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 SERPINB11Q96P15 392 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 LHX5Q9H2C1 402 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 SFMBT1Q9UHJ3 866 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 DAAM1Q9Y4D1 1078 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 CEP83Q9Y592 693 aa21.51■■□□□ 1.03
VPS28-206ENST00000526734 SGK1O00141 431 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 NPC1O15118 1278 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 IGLV3-27P01718 113 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 CISD3P0C7P0 127 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 PDCLQ13371 301 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 USP39Q53GS9 565 aaKnown RBP21.5■■□□□ 1.03
VPS28-206ENST00000526734 HSP90AA4PQ58FG1 418 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 ADGRF1Q5T601 910 aa21.5■■□□□ 1.03
VPS28-206ENST00000526734 SDE2Q6IQ49 451 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms