RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 EOGTQ5NDL2 527 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 BSPRYQ5W0U4 402 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 PMF1Q6P1K2 205 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 GJB7Q6PEY0 223 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 IRF2BP1Q8IU81 584 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 DENND1CQ8IV53 801 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 ETFBKMTQ8IXQ9 262 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 KIAA2013Q8IYS2 634 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 ALLCQ8N6M5 410 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 IRGQQ8WZA9 623 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 HSFY1Q96LI6 401 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 ZSWIM1Q9BR11 485 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 TUBGCP2Q9BSJ2 902 aa13.48□□□□□ -0.25
CHMP3-208ENST00000486404 POLR3BQ9NW08 1133 aaPredicted RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 BCCIPQ9P287 314 aaKnown RBP eCLIP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 HBS1LQ9Y450 684 aaKnown RBP13.48□□□□□ -0.25
CHMP3-208ENST00000486404 PLXND1Q9Y4D7 1925 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 CCDC163A0A0D9SF12 145 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 LTFP02788 710 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 EEF1GP26641 437 aaKnown RBP13.47□□□□□ -0.25
CHMP3-208ENST00000486404 PON1P27169 355 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 ACADSBP45954 432 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 DGKGP49619 791 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 DGKEP52429 567 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 APBA1Q02410 837 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 MEA1Q16626 185 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 VWA3BQ502W6 1294 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 ANO7Q6IWH7 933 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 DENND1BQ6P3S1 775 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 SASS6Q6UVJ0 657 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 BHLHA9Q7RTU4 235 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 SFTPA1Q8IWL2 248 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 SCML4Q8N228 414 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 DCLK2Q8N568 766 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 ZNF513Q8N8E2 541 aaPredicted RBP13.47□□□□□ -0.25
CHMP3-208ENST00000486404 TXNDC5Q8NBS9 432 aaKnown RBP13.47□□□□□ -0.25
CHMP3-208ENST00000486404 GPT2Q8TD30 523 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 SLC35F5Q8WV83 523 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 GAB3Q8WWW8 586 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 FAM149B1Q96BN6 582 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 TRIM62Q9BVG3 475 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 MIS12Q9H081 205 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 NDST4Q9H3R1 872 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 USP18Q9UMW8 372 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 CNTN6Q9UQ52 1028 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 NFE2L3Q9Y4A8 694 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 CFAP54Q96N23 3096 aa13.47□□□□□ -0.25
CHMP3-208ENST00000486404 GPR179Q6PRD1 2367 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 WDR87Q6ZQQ6 2873 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 MSI1O43347 362 aaKnown RBP13.46□□□□□ -0.25
CHMP3-208ENST00000486404 HRO43593 1189 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 HOXC13P31276 330 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 MESP2Q0VG99 397 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 RAPGEF1Q13905 1077 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 STX1AQ16623 288 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 PHTF2Q8N3S3 785 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 GPR161Q8N6U8 529 aaKnown RBP13.46□□□□□ -0.25
CHMP3-208ENST00000486404 IL17RCQ8NAC3 791 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 CLEC4CQ8WTT0 213 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 SHC3Q92529 594 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 NOX5Q96PH1 765 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 POLMQ9NP87 494 aaPredicted RBP13.46□□□□□ -0.25
CHMP3-208ENST00000486404 ZDHHC4Q9NPG8 344 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 PLK2Q9NYY3 685 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 SFMBT1Q9UHJ3 866 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 DNAJC12Q9UKB3 198 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 AGO1Q9UL18 857 aaKnown RBP13.46□□□□□ -0.25
CHMP3-208ENST00000486404 CEP83Q9Y592 693 aa13.46□□□□□ -0.25
CHMP3-208ENST00000486404 THADAQ6YHU6 1953 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 CAPN9O14815 690 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 ZBTB24O43167 697 aaPredicted RBP13.45□□□□□ -0.26
CHMP3-208ENST00000486404 KLKB1P03952 638 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 RETP07949 1114 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 NCAM1P13591 858 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 GBP1P32455 592 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 PTK2Q05397 1052 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 PDCLQ13371 301 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 CRY1Q16526 586 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 TCP11X2Q5H9J9 407 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 CCDC183Q5T5S1 534 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 NUGGCQ68CJ6 796 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 SDE2Q6IQ49 451 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 MSANTD2Q6P1R3 559 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 CACNA2D4Q7Z3S7 1137 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 PASD1Q8IV76 773 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 ANKRD20A12PQ8NF67 263 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 DDI1Q8WTU0 396 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 ZNF606Q8WXB4 792 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 SPACA7Q96KW9 195 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 SERPINB11Q96P15 392 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 LSM14BQ9BX40 385 aaKnown RBP13.45□□□□□ -0.26
CHMP3-208ENST00000486404 TPSD1Q9BZJ3 242 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 SYNCQ9H7C4 482 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 ANO10Q9NW15 660 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 TAB2Q9NYJ8 693 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 EBF1Q9UH73 591 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 FRYLO94915 3013 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 SPTBN4Q9H254 2564 aa13.45□□□□□ -0.26
CHMP3-208ENST00000486404 NUP205Q92621 2012 aa13.44□□□□□ -0.26
CHMP3-208ENST00000486404 TCRBV21S2A2A0A5A6 115 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms