RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 MLH1P40692 756 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 ARHGAP8P85298 464 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 PRKD1Q15139 912 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 TRIP10Q15642 601 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 GRAMD1BQ3KR37 738 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 SLC44A4Q53GD3 710 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 KCNT1Q5JUK3 1230 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 TCHHL1Q5QJ38 904 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PRPF39Q86UA1 669 aaKnown RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 RNF168Q8IYW5 571 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PIP4K2CQ8TBX8 421 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 CFAP57Q96MR6 1250 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 CATSPER2Q96P56 530 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 FAM111AQ96PZ2 611 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 TRIM55Q9BYV6 548 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 ACSS3Q9H6R3 686 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 CYP4F11Q9HBI6 524 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 RBAKQ9NYW8 714 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PPARGC1AQ9UBK2 798 aaKnown RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 SLC24A2Q9UI40 661 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 ARHGAP42A6NI28 874 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 MSCO60682 206 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 GSRP00390 522 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 KRT1P04264 644 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 UQCRBP14927 111 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 OXCT1P55809 520 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 GSTM4Q03013 218 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 CAPSQ13938 189 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 TMEM132BQ14DG7 1078 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 SMTNL2Q2TAL5 461 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 PPP6R3Q5H9R7 873 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 GJC2Q5T442 439 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 DENND1BQ6P3S1 775 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 C1orf228Q6PIY5 440 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 B3GNT6Q6ZMB0 384 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 TTLL6Q8N841 843 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 RNF169Q8NCN4 708 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 BBOF1Q8ND07 529 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 LPAR1Q92633 364 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 DGCR14Q96DF8 476 aaKnown RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PAFAH2Q99487 392 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 PLVAPQ9BX97 442 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 SENP6Q9GZR1 1112 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 SDCBP2Q9H190 292 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 RPAP3Q9H6T3 665 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PTTG2Q9NZH5 202 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 BTBD7Q9P203 1132 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 SEPT9Q9UHD8 586 aaPredicted RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 PAIP2BQ9ULR5 123 aaKnown RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 SMG5Q9UPR3 1016 aaKnown RBP8.68□□□□□ -1.02
VAPB-205ENST00000476395 EFR3BQ9Y2G0 817 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 IKBKGQ9Y6K9 419 aa8.68□□□□□ -1.02
VAPB-205ENST00000476395 KAT6AQ92794 2004 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 XPOTO43592 962 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 DKC1O60832 514 aaKnown RBP eCLIP8.67□□□□□ -1.02
VAPB-205ENST00000476395 ZMPSTE24O75844 475 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 FAM155BO75949 473 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 ENDOD1O94919 500 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 TGFB3P10600 412 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 ATF7P17544 494 aaPredicted RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 TNNI1P19237 187 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 HOXD12P35452 270 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 ATXN3P54252 364 aaPredicted RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 GEMIN4P57678 1058 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 MYL6P60660 151 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 NAA20P61599 178 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 AP2B1P63010 937 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 MRPS5P82675 430 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 OTUD4Q01804 1114 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 FOLH1Q04609 750 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 PDK1Q15118 436 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 SH3PXD2AQ5TCZ1 1133 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 ZCCHC8Q6NZY4 707 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 TRIM72Q6ZMU5 477 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 TMC7Q7Z402 723 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 DHDDSQ86SQ9 333 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 RAVER1Q8IY67 606 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.67□□□□□ -1.02
VAPB-205ENST00000476395 ACTL9Q8TC94 416 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 EBF4Q9BQW3 602 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 MIS12Q9H081 205 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 RBM38Q9H0Z9 239 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 SMYD2Q9NRG4 433 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 PSMC3IPQ9P2W1 217 aaPredicted RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 HMGXB4Q9UGU5 601 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 PCDHGC3Q9UN70 934 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 OTOFQ9HC10 1997 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 CAPN14A8MX76 684 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 ATP9BO43861 1147 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 TOP3BO95985 862 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 HOXC6P09630 235 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 RPL10P27635 214 aaKnown RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 PMLP29590 882 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 MSX2P35548 267 aaPredicted RBP8.67□□□□□ -1.02
VAPB-205ENST00000476395 RAP1GDS1P52306 607 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 SLC18A2Q05940 514 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 SULT2A1Q06520 285 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 GRM2Q14416 872 aa8.67□□□□□ -1.02
VAPB-205ENST00000476395 C4orf46Q504U0 113 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms