RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PTPN1P18031 435 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CD58P19256 250 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CDK11BP21127 795 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 PON1P27169 355 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 GPR15P49685 360 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 COPB1P53618 953 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 YWHAEP62258 255 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 GCNT1Q02742 428 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SLC14A1Q13336 389 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 PDGFRLQ15198 375 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CCDC142Q17RM4 750 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SDHAF4Q5VUM1 108 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CC2D1AQ6P1N0 951 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MON1AQ86VX9 555 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 ARHGEF19Q8IW93 802 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SCN4BQ8IWT1 228 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SCUBE3Q8IX30 993 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CRYBG2Q8N1P7 616 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 PPM1KQ8N3J5 372 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MINDY1Q8N5J2 469 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MAB21L3Q8N8X9 362 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MDGA1Q8NFP4 955 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MYCBPAPQ8TBZ2 947 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 WHAMMQ8TF30 809 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 RLN3Q8WXF3 142 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 MYLPFQ96A32 169 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 PCED1BQ96HM7 432 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SPACA7Q96KW9 195 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 SPATA17Q96L03 361 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CAMK1GQ96NX5 476 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 VPS16Q9H269 839 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 TSPY26PQ9H489 355 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 FSCN3Q9NQT6 498 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CISHQ9NSE2 258 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 TDP1Q9NUW8 608 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 APOBEC2Q9Y235 224 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 CCL26Q9Y258 94 aa12.57□□□□□ -0.4
SQSTM1-206ENST00000466342 ATXN7O15265 892 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 SH3BP5O60239 455 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ALDH1A2O94788 518 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ATP1A3P13637 1013 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 TRIM21P19474 475 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 SLC9A1P19634 815 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 BDNFP23560 247 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ITPKAP23677 461 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 CYP27A1Q02318 531 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ZNF268Q14587 947 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 CRY1Q16526 586 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 MDH1BQ5I0G3 518 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 LYSMD4Q5XG99 296 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 TXNDC8Q6A555 127 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 APTXQ7Z2E3 356 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ACOT1Q86TX2 421 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 LUZP1Q86V48 1076 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 CPA6Q8N4T0 437 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 UBR7Q8N806 425 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 LSM14AQ8ND56 463 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 USP33Q8TEY7 942 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 USP13Q92995 863 aaPredicted RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 FAM81BQ96LP2 452 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 TWNKQ96RR1 684 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 NT5C1AQ9BXI3 368 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 DNAI2Q9GZS0 605 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 ECT2Q9H8V3 914 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 CAPN10Q9HC96 672 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 DNAAF2Q9NVR5 837 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 EHD2Q9NZN4 543 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 APEX2Q9UBZ4 518 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 MMP17Q9ULZ9 603 aa12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 MYO18AQ92614 2054 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 GOLGA4Q13439 2230 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-206ENST00000466342 LGALS16A8MUM7 142 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ARHGAP33O14559 1287 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 TRIM66O15016 1216 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 GRIK1P39086 918 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 RAD23BP54727 409 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ZNF445P59923 1031 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 TPM4P67936 248 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 KCNMA1Q12791 1236 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ORC1Q13415 861 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 BYSLQ13895 437 aaKnown RBP12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 C2orf27AQ580R0 203 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 FKBP15Q5T1M5 1219 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 TOGARAM2Q6ZUX3 1019 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 RRAGAQ7L523 313 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ENOSF1Q7L5Y1 443 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 RABEPKQ7Z6M1 372 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 SLCO6A1Q86UG4 719 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 TTC30AQ86WT1 665 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 LURAP1LQ8IV03 231 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 FRMD1Q8N878 549 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 KAT5Q92993 513 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 JAKMIP2Q96AA8 810 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 C8orf48Q96LL4 319 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 KREMEN1Q96MU8 473 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 B3GNT5Q9BYG0 378 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 ELOVL4Q9GZR5 314 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 POLMQ9NP87 494 aaPredicted RBP12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 SIX2Q9NPC8 291 aa12.55□□□□□ -0.4
SQSTM1-206ENST00000466342 KIAA1522Q9P206 1035 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms