RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ZNF575Q86XF7 245 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 P3H2Q8IVL5 708 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 FAM71DQ8N9W8 422 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 PNLDC1Q8NA58 520 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 IPO4Q8TEX9 1081 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 SAP30LQ9HAJ7 183 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 FLRT1Q9NZU1 646 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 SEMA5BQ9P283 1151 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 DAAM1Q9Y4D1 1078 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 ARHGEF17Q96PE2 2063 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 GCATO75600 419 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 USP1O94782 785 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 MBPP02686 304 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 TMIGD3P0DMS9 266 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 NPPBP16860 134 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 DRD1P21728 446 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 CERKLQ49MI3 558 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 PGBD2Q6P3X8 592 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 TMEM65Q6PI78 240 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 C1orf228Q6PIY5 440 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF782Q6ZMW2 699 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 USP29Q9HBJ7 922 aa6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 MAGED2Q9UNF1 606 aaPredicted RBP6.56□□□□□ -1.36
CCDC88A-206ENST00000430086 SPATA31A1Q5TZJ5 1347 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 J3KTA2 159 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 MASP2O00187 686 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 PCDH17O14917 1159 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 PIP5K1BO14986 540 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 PRAMEF2O60811 474 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 MMP8P22894 467 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 C21orf58P58505 322 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 SEMA3BQ13214 749 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 OS9Q13438 667 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 CCDC144NLQ6NUI1 221 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 DCDC5Q6ZRR9 648 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 PIK3AP1Q6ZUJ8 805 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 TTC30AQ86WT1 665 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF527Q8NB42 609 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 MORC4Q8TE76 937 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 PRR11Q96HE9 360 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 HS6ST2Q96MM7 605 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 RPS6KC1Q96S38 1066 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 CRB3Q9BUF7 120 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 SEMA4CQ9C0C4 833 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 FSCN3Q9NQT6 498 aa6.55□□□□□ -1.36
CCDC88A-206ENST00000430086 GXYLT2A0PJZ3 443 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 CLIC1O00299 241 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 CTIFO43310 598 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 ANXA6P08133 673 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 CYP2A6P11509 494 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 GALNSP34059 522 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 GSTM5P46439 218 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 PTK2BQ14289 1009 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 CSHL1Q14406 222 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 SPARCL1Q14515 664 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 KCNB1Q14721 858 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 MFSD13AQ14CX5 517 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 COLEC12Q5KU26 742 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 KIAA1614Q5VZ46 1190 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 VSTM1Q6UX27 236 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 EXOC8Q8IYI6 725 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 C8orf58Q8NAV2 365 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 FAM71BQ8TC56 605 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF398Q8TD17 642 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 PAAF1Q9BRP4 392 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 FRMD4BQ9Y2L6 1034 aa6.54□□□□□ -1.36
CCDC88A-206ENST00000430086 PNMA6EA0A0J9YXQ4 647 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 TMEM232C9JQI7 657 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 OVOL3O00110 214 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 FYB1O15117 783 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 NPC1O15118 1278 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 TAF5LO75529 589 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 SKAP2O75563 359 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 ITGA5P08648 1049 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 MATN1P21941 496 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 CERS1P27544 350 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 DUSP1P28562 367 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 FOXF2Q12947 444 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 BIRC2Q13490 618 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 BFSP2Q13515 415 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 KRT72Q14CN4 511 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 CCDC142Q17RM4 750 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 MSANTD2Q6P1R3 559 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF813Q6ZN06 617 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF66Q6ZN08 573 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 MYLK4Q86YV6 388 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 PNISRQ8TF01 805 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 HIC2Q96JB3 615 aa6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 PRPF18Q99633 342 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 TP63Q9H3D4 680 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-206ENST00000430086 CGB1A6NKQ9 187 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 AQP12BA6NM10 295 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 F5H423 210 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 TUBB4AP04350 444 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 PDIA3P30101 505 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 IGHMBP2P38935 993 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 JAK3P52333 1124 aa6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ALDH18A1P54886 795 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 RAE1P78406 368 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-206ENST00000430086 ICA1Q05084 483 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms