RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SAP30LQ9HAJ7 183 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 USP29Q9HBJ7 922 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 ARPP21Q9UBL0 812 aaPredicted RBP4.79□□□□□ -1.64
USP40-204ENST00000427947 GRHPRQ9UBQ7 328 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 SERGEFQ9UGK8 458 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 PCDHB2Q9Y5E7 798 aa4.79□□□□□ -1.64
USP40-204ENST00000427947 SMIM22K7EJ46 135 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 IGLV2-14P01704 120 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 ITGA2BP08514 1039 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 ALADP13716 330 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 GYS1P13807 737 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 HOXA4Q00056 320 aaPredicted RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 CCDC15Q0P6D6 951 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 SEMA3BQ13214 749 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 DNASE1L3Q13609 305 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 KCNJ12Q14500 433 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 TRIM71Q2Q1W2 868 aaKnown RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 FAM90A2PQ658T7 463 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 LIN54Q6MZP7 749 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 CCDC144NLQ6NUI1 221 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 MSANTD2Q6P1R3 559 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 FBXO42Q6P3S6 717 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 KLHL17Q6TDP4 642 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 SERPINA13PQ6UXR4 307 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 BCDIN3DQ7Z5W3 292 aaKnown RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 NRSN1Q8IZ57 195 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 FAM71DQ8N9W8 422 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 MAFAQ8NHW3 353 aaPredicted RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 CCT6BQ92526 530 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 MAGEH1Q9H213 219 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 TP63Q9H3D4 680 aaPredicted RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 VPS45Q9NRW7 570 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 VPS4AQ9UN37 437 aa4.78□□□□□ -1.64
USP40-204ENST00000427947 MORC2Q9Y6X9 1032 aaPredicted RBP4.78□□□□□ -1.64
USP40-204ENST00000427947 SPATA31A6Q5VVP1 1343 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 LRRC3CA6NJW4 275 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 H7C1Q1 480 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 CTIFO43310 598 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 PRAMEF2O60811 474 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 EIF5BO60841 1220 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 GCATO75600 419 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 C1QL1O75973 258 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 CER1O95813 267 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 TMIGD3P0DMS9 266 aaPredicted RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 APEHP13798 732 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 GALNSP34059 522 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 GPC5P78333 572 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 RAE1P78406 368 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 BTBD16Q32M84 506 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 TMEM119Q4V9L6 283 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 SUMO4Q6EEV6 95 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 SULT6B1Q6IMI4 303 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 TMEM65Q6PI78 240 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 C12orf76Q8N812 135 aaPredicted RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 OR1N1Q8NGS0 311 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 WDR60Q8WVS4 1066 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 OVCA2Q8WZ82 227 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 EID2BQ96D98 161 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 EDC3Q96F86 508 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 SORBS1Q9BX66 1292 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 R3HDMLQ9H3Y0 253 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 ASIC5Q9NY37 505 aa4.77□□□□□ -1.65
USP40-204ENST00000427947 HERC5Q9UII4 1024 aaKnown RBP4.77□□□□□ -1.65
USP40-204ENST00000427947 RPP40O75818 363 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 EIF3JO75822 258 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 ACTL6BO94805 426 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 MT-CO3P00414 261 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 VEGFAP15692 232 aaPredicted RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 IGHMBP2P38935 993 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 HALP42357 657 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 GRK6P43250 576 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 ELLP55199 621 aaPredicted RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 CFHR3Q02985 330 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 FOXO1Q12778 655 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 MFSD13AQ14CX5 517 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 TIGD6Q17RP2 521 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 ATPAF1Q5TC12 328 aaPredicted RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 RD3Q7Z3Z2 195 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 LINC01465Q8N7H1 131 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 ANKRD42Q8N9B4 389 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 FAM98AQ8NCA5 519 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 SLC22A17Q8WUG5 538 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 ZG16BQ96DA0 208 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 MCRS1Q96EZ8 462 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 FYTTD1Q96QD9 318 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 RTKNQ9BST9 563 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 PAGR1Q9BTK6 254 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 MYLK2Q9H1R3 596 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 AGO4Q9HCK5 861 aaKnown RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 FBXO28Q9NVF7 368 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 UBE2J1Q9Y385 318 aaPredicted RBP4.76□□□□□ -1.65
USP40-204ENST00000427947 RIPOR2Q9Y4F9 1068 aa4.76□□□□□ -1.65
USP40-204ENST00000427947 FNDC1Q4ZHG4 1894 aaPredicted RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 CCDC187A0A096LP49 1063 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.75□□□□□ -1.65
USP40-204ENST00000427947 KIF28PB7ZC32 967 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 UBE2Q2LH0YL09 131 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 FYB1O15117 783 aa4.75□□□□□ -1.65
USP40-204ENST00000427947 MBPP02686 304 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms