RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 VANGL2Q9ULK5 521 aa17.78■□□□□ 0.44
PHRF1-202ENST00000413872 LYPLA2O95372 231 aa17.78■□□□□ 0.44
PHRF1-202ENST00000413872 PTPN1P18031 435 aaKnown RBP17.78■□□□□ 0.44
PHRF1-202ENST00000413872 NPY2RP49146 381 aa17.78■□□□□ 0.44
PHRF1-202ENST00000413872 DUSP10Q9Y6W6 482 aa17.78■□□□□ 0.44
PHRF1-202ENST00000413872 SLCO1B7G3V0H7 640 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 SCNN1GP51170 649 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 PTENP60484 403 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 LRRC74AQ0VAA2 488 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 TMEM161BQ8NDZ6 487 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 MSRAQ9UJ68 235 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 DYRK1BQ9Y463 629 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 WTIPA6NIX2 430 aaPredicted RBP17.77■□□□□ 0.44
PHRF1-202ENST00000413872 MYO1CO00159 1063 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 NOS2P35228 1153 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 SGO1Q5FBB7 561 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 ILDR1Q86SU0 546 aaPredicted RBP17.77■□□□□ 0.44
PHRF1-202ENST00000413872 PGLYRP2Q96PD5 576 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.77■□□□□ 0.442e-6■■□□□ 13.6
PHRF1-202ENST00000413872 SCHIP1Q9P0W5 487 aaPredicted RBP17.77■□□□□ 0.44
PHRF1-202ENST00000413872 RAD54BQ9Y620 910 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 PRKAR2AP13861 404 aaKnown RBP17.77■□□□□ 0.44
PHRF1-202ENST00000413872 PPM1AP35813 382 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 NKX2-3Q8TAU0 364 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 CCDC90BQ9GZT6 254 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 PCDHA3Q9Y5H8 950 aa17.77■□□□□ 0.44
PHRF1-202ENST00000413872 TMEM88BA6NKF7 163 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 ZBTB48P10074 688 aaPredicted RBP17.77■□□□□ 0.43
PHRF1-202ENST00000413872 HOXB8P17481 243 aaPredicted RBP17.77■□□□□ 0.43
PHRF1-202ENST00000413872 NOMO2Q5JPE7 1267 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 ACBD5Q5T8D3 534 aaPredicted RBP17.77■□□□□ 0.43
PHRF1-202ENST00000413872 PTF1AQ7RTS3 328 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 NUP93Q8N1F7 819 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 HTR3CQ8WXA8 447 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 GIT1Q9Y2X7 761 aa17.77■□□□□ 0.43
PHRF1-202ENST00000413872 PGK1P00558 417 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 LSP1P33241 339 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 CDH8P55286 799 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 RFWD2Q8NHY2 731 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 WDR41Q9HAD4 459 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 MLH1P40692 756 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 CSE1LP55060 971 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 NCKAP1LP55160 1127 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 FOXR2Q6PJQ5 311 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 STRA8Q7Z7C7 330 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 MSL3Q8N5Y2 521 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ZNF333Q96JL9 665 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 HTATIP2Q9BUP3 242 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 TMEM161AQ9NX61 479 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 A0A087X0B3 334 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ZBTB39O15060 712 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 FGF10O15520 208 aaPredicted RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 OCM2P0CE71 109 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 OCMP0CE72 109 aaPredicted RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 BDNFP23560 247 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 TGM3Q08188 693 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ZC3H12BQ5HYM0 836 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 STX19Q8N4C7 294 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ERP27Q96DN0 273 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 SGF29Q96ES7 293 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 PDGFDQ9GZP0 370 aaPredicted RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 COPS7BQ9H9Q2 264 aaPredicted RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 RUVBL2Q9Y230 463 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 CYP2A6P11509 494 aaPredicted RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ATP5C1P36542 298 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 PHKG1Q16816 387 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 DUSP28Q4G0W2 176 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 KIAA0319LQ8IZA0 1049 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ZNF555Q8NEP9 628 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 PPTC7Q8NI37 304 aa17.76■□□□□ 0.43
PHRF1-202ENST00000413872 ACO2Q99798 780 aaKnown RBP17.76■□□□□ 0.43
PHRF1-202ENST00000413872 MAP3K13O43283 966 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 ENDOD1O94919 500 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 FKBP9O95302 570 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 ATP5BP06576 529 aaKnown RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 GRK2P25098 689 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 POLR2LP62875 67 aaKnown RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 FKBP9P1Q75LS8 142 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 LGI2Q8N0V4 545 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 MTMR14Q8NCE2 650 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 FAM111AQ96PZ2 611 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CDT1Q9H211 546 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 SEPT3Q9UH03 358 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 E2F8A0AVK6 867 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 IFRD1O00458 451 aaPredicted RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 SLC22A9Q8IVM8 553 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 SCUBE3Q8IX30 993 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CSGALNACT1Q8TDX6 532 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 WNT8BQ93098 351 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 SKA1Q96BD8 255 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 IL17RAQ96F46 866 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 ULBP1Q9BZM6 244 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 MARCH2Q9P0N8 246 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CDV3Q9UKY7 258 aaKnown RBP17.75■□□□□ 0.43
PHRF1-202ENST00000413872 PRKCIP41743 596 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 RAD23BP54727 409 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 CAPSQ13938 189 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 LPCAT1Q8NF37 534 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 LRRC10BA6NIK2 292 aa17.75■□□□□ 0.43
PHRF1-202ENST00000413872 TRPM8Q7Z2W7 1104 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms