RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 RIC8BQ9NVN3 520 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 UBQLN1Q9UMX0 589 aaKnown RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 TECPR2O15040 1411 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 GMNCA6NCL1 334 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 FGRP09769 529 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 INSRRP14616 1297 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 NFIAQ12857 509 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 ZSWIM7Q19AV6 140 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 CCDC103Q8IW40 242 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 USP13Q92995 863 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 THAP11Q96EK4 314 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 LRRC1Q9BTT6 524 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 BRD9Q9H8M2 597 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 ATP13A1Q9HD20 1204 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 DPP7Q9UHL4 492 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 PDS5AQ29RF7 1337 aaKnown RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 MANSC4A6NHS7 340 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 INPP4BO15327 924 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 RBMXL2O75526 392 aaKnown RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SLC25A12O75746 678 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 HIST1H2ABP04908 130 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 CNPP09543 421 aaKnown RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 TYMPP19971 482 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 NUP62P37198 522 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 MRNIPQ6NTE8 343 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 PSRC1Q6PGN9 363 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 HIST3H2AQ7L7L0 130 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 STRA8Q7Z7C7 330 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 HELQQ8TDG4 1101 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 CASP10Q92851 521 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 HIST1H2ACQ93077 130 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 OSBPL8Q9BZF1 889 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 KIF24Q5T7B8 1368 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 DDX3XO00571 662 aaKnown RBP eCLIP8.64□□□□□ -1.032e-10■■■■□ 20.4
SCN9A-203ENST00000409672 SLC37A4O43826 429 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 CDH2P19022 906 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 EPORP19235 508 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 STX4Q12846 297 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 NAPEPLDQ6IQ20 393 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 TIGD7Q6NT04 549 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SLC4A9Q96Q91 983 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 PCDHB5Q9Y5E4 795 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SYNMO15061 1565 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 ANXA9O76027 345 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 NR6A1Q15406 480 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SHC4Q6S5L8 630 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 NEK10Q6ZWH5 1172 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 ILDR2Q71H61 639 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SLC47A2Q86VL8 602 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SLC13A5Q86YT5 568 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 SPPL2AQ8TCT8 520 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 CXorf40BQ96DE9 158 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 C1QTNF7Q9BXJ2 289 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 ELOVL6Q9H5J4 265 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 TLE6Q9H808 572 aa8.64□□□□□ -1.03
SCN9A-203ENST00000409672 RBM22Q9NW64 420 aaKnown RBP eCLIP8.64□□□□□ -1.03
SCN9A-203ENST00000409672 TBL1XO60907 577 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 BAIAP3O94812 1187 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 RBP3P10745 1247 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 ITGA8P53708 1063 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SP3Q02447 781 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 CRYMQ14894 314 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 ACAP2Q15057 778 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 PTPN20Q4JDL3 420 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 KIF2BQ8N4N8 673 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 GLMNQ92990 594 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 PURBQ96QR8 312 aaKnown RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 NIF3L1Q9GZT8 377 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SHROOM2Q13796 1616 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 IL2P60568 153 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 ORC2Q13416 577 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 CUL2Q13617 745 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 LRRC8DQ7L1W4 858 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SAPCD2Q86UD0 394 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 GTPBP2Q9BX10 602 aaKnown RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 PLEKHG2Q9H7P9 1386 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 TMEM191CA6NGB0 347 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 EIF3DO15371 548 aaKnown RBP eCLIP8.63□□□□□ -1.036e-6■■■■□ 21
SCN9A-203ENST00000409672 HS6ST1O60243 411 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SLC2A3P11169 496 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 NFKB1P19838 968 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 GCLCP48506 637 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SCRN3Q0VDG4 424 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 GRIK3Q13003 919 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 GPAT3Q53EU6 434 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 ATAD3BQ5T9A4 648 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 AGMOQ6ZNB7 445 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 CDK20Q8IZL9 346 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 ATG16L2Q8NAA4 619 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 LRRN4Q8WUT4 740 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 H3BN98 237 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 AP3B1O00203 1094 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 RASGRP1O95267 797 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 RPN2P04844 631 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 CHN1P15882 459 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 COL9A2Q14055 689 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 FIG4Q92562 907 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 TRIT1Q9H3H1 467 aaKnown RBP8.63□□□□□ -1.03
SCN9A-203ENST00000409672 SLC28A3Q9HAS3 691 aa8.63□□□□□ -1.03
SCN9A-203ENST00000409672 TRAV19A0A0A6YYK7 116 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms