RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ZNF280DQ6N043 979 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 ARFGAP1Q8N6T3 406 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 BBOF1Q8ND07 529 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 UHMK1Q8TAS1 419 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 SGSM3Q96HU1 749 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 PRMT1Q99873 361 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 NCAPGQ9BPX3 1015 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CNPY3Q9BT09 278 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 MRPL42Q9Y6G3 142 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CARNS1A5YM72 827 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 HHLA1C9JL84 531 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 FBXO21O94952 628 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 SDC4P31431 198 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 GJC1P36383 396 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 SLCO1A2P46721 670 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 PPIGQ13427 754 aaKnown RBP eCLIP13.69□□□□□ -0.224e-12■■□□□ 11.7
SQSTM1-201ENST00000360718 SNCBQ16143 134 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 NFE2Q16621 373 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CTXN3Q4LDR2 81 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 RAB6CQ53S08 254 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 TMEM240Q5SV17 173 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 LRRC38Q5VT99 294 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CEP128Q6ZU80 1094 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 SLC26A9Q7LBE3 791 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 LRRC34Q8IZ02 419 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 ATL2Q8NHH9 583 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 DYDC1Q8WWB3 177 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 RXFP2Q8WXD0 754 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 ZCWPW1Q9H0M4 648 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 RAB6CQ9H0N0 254 aa13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CDC42EP4Q9H3Q1 356 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 DMAP1Q9NPF5 467 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-201ENST00000360718 CHD7Q9P2D1 2997 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 LAMA3Q16787 3333 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 OR6C75A6NL08 312 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 C2CD4BA6NLJ0 364 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 ZBBXA8MT70 800 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 H7C4K7 107 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 KRT7P08729 469 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 ADCY1Q08828 1119 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 PTK6Q13882 451 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 SLC39A12Q504Y0 691 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 SH3PXD2AQ5TCZ1 1133 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 KCNT2Q6UVM3 1135 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 ARCQ7LC44 396 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 PARP9Q8IXQ6 854 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 KATNAL2Q8IYT4 538 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 C1orf54Q8WWF1 131 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 IGSF21Q96ID5 467 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 CSNK1G1Q9HCP0 422 aa13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 DDX56Q9NY93 547 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 ZMYND8Q9ULU4 1186 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 ZNF638Q14966 1978 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-201ENST00000360718 FGBP02675 491 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TKTL1P51854 596 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 BTG3Q14201 252 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TXNRD3NBQ6F5E7 133 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 CYB5D1Q6P9G0 228 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 PRSS55Q6UWB4 352 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 POLNQ7Z5Q5 900 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 EXOC3L1Q86VI1 746 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 RNF168Q8IYW5 571 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 EXD1Q8NHP7 514 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ELAC2Q9BQ52 826 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 CCDC77Q9BR77 488 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TACO1Q9BSH4 297 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 OXCT2Q9BYC2 517 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ADAM33Q9BZ11 813 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TBC1D4O60343 1298 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 LRCH4O75427 683 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TTC4O95801 387 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 LINC00271P0C7V0 271 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ATF2P15336 505 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 CYP2F1P24903 491 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 MRPS5P82675 430 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 RHBDF2Q6PJF5 856 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ANKS3Q6ZW76 656 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 RCOR2Q8IZ40 523 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TTC9BQ8N6N2 239 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 MAGEC3Q8TD91 643 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ARHGEF2Q92974 986 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 FAM149B1Q96BN6 582 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 RBM41Q96IZ5 413 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 MYCBPQ99417 103 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 PLCD4Q9BRC7 762 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 TTPALQ9BTX7 342 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 PNPLA8Q9NP80 782 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 CNGB3Q9NQW8 809 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 ANAPC5Q9UJX4 755 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 CEP290O15078 2479 aa13.67□□□□□ -0.22
SQSTM1-201ENST00000360718 DPYSL4O14531 572 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ADAM12O43184 909 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 TFE3P19532 575 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 PCK1P35558 622 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 GRIK1P39086 918 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ADCY8P40145 1251 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 SNX1Q13596 522 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 ATP13A4Q4VNC1 1196 aa13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 CMTR2Q8IYT2 770 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-201ENST00000360718 STKLD1Q8NE28 680 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms