RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Vmn1r213Q8R278 384 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Etv3Q8R4Z4 513 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Sh3d19Q91X43 789 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Snx1Q9WV80 522 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gm5538W4VSP6 401 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rtl9Q32KG4 1339 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Serpina3iD3Z450 408 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 FancfE9Q5Z5 343 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Arl4aP61213 200 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Itga11P61622 1188 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Cdh9P70407 786 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Wbp2P97765 261 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Sdr16c6Q05A13 316 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 ZufspQ3T9Z9 577 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Upf3aQ3ULJ3 422 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Fam177a1Q8BR63 207 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Q8C1R3 189 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Prpsap2Q8R574 369 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 PigxQ99LV7 254 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Fbxo32Q9CPU7 355 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 SgshQ9EQ08 502 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 PnkpQ9JLV6 522 aaKnown RBP9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 Scn5aQ9JJV9 2019 aa9.04□□□□□ -0.96
Trim39-201ENSMUST00000042717 IqccA2ADZ8 418 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rabgap1lA6H6A9 815 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ccdc144bE9PVZ3 520 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Grem1O70326 184 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Slc26a1P58735 704 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Cops2P61202 443 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Pdcd1Q02242 288 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Fut7Q11131 389 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gm29609Q3UU56 907 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gm13103Q4VAD2 491 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ltbp3Q61810 1268 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Fcrl5Q68SN8 596 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Defb34Q7TNV8 81 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Clec2eQ80XD9 204 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gtf3c2Q8BL74 907 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 BoraQ8BS90 525 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Spata16Q8C636 571 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Lsm14bQ8CGC4 385 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Taf12Q8VE65 161 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Nle1Q8VEJ4 485 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ccdc65Q8VHI7 493 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Nek8Q91ZR4 698 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gps1Q99LD4 471 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Clp1Q99LI9 425 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 LrmdaQ9D9B4 229 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Wdr83Q9DAJ4 315 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Anxa9Q9JHQ0 345 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Tubb1A2AQ07 451 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Trim30cD3YVI9 513 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Gm5795E9PZN8 263 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Myadml2Q08AU7 307 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ccndbp1Q3TVC7 356 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Tespa1Q3U132 458 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Syne3Q4FZC9 975 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Fbxw2Q60584 422 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Tfdp2Q64163 446 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Krt42Q6IFX2 452 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rasa4Q6PFQ7 802 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 GmipQ6PGG2 971 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Tas2r115Q7M719 310 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Olfr1057Q7TR75 315 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Crb2Q80YA8 1282 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Erlin2Q8BFZ9 340 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rufy1Q8BIJ7 712 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Smarcal1Q8BJL0 910 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 RbakQ8BQC8 711 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Slco2b1Q8BXB6 683 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ttc24Q8BYG0 334 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Smoc2Q8CD91 447 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Taf10Q8K0H5 218 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Smim14Q91VT8 99 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Trim66Q924W6 1242 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Prl2a1Q9JHK0 228 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ccdc86Q9JJ89 426 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Cul1Q9WTX6 776 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Igkv17-121A0A0G2JFA8 117 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rhox3cA2AWM0 215 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 R3hdm1E9Q9Q2 1135 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Atf6F6VAN0 656 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 E230025N22RikG5E8S3 482 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rhox3hL7MU37 215 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Dcpp3L7N259 170 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Hoxb8P09632 243 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Atxn1lP0C7T6 687 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Usp4P35123 962 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Bmpr1aP36895 532 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Aff3P51827 1254 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 SiaeP70665 541 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 VcpQ01853 806 aaKnown RBP9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Mrgprx2Q3UG50 352 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Ccdc34Q3UI66 367 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rnf10Q3UIW5 804 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Bpifb5Q3UQ05 490 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Rhox3aQ4TU90 215 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 AcdQ5EE38 416 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 Cldn11Q60771 207 aa9.03□□□□□ -0.96
Trim39-201ENSMUST00000042717 OcrlQ6NVF0 900 aa9.03□□□□□ -0.96
Retrieved 100 of 22,080 RNA–protein pairs in 28.6 ms