Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Gm25239-201ENSMUST00000174915 86 ntBASIC41,62■■■■■ 4,25
Scn5aQ9JJV9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38,75■■■■□ 3,79
Scn5aQ9JJV9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37,89■■■■□ 3,66
Scn5aQ9JJV9 Gm24109-201ENSMUST00000175489 103 ntBASIC36,31■■■■□ 3,4
Scn5aQ9JJV9 Gm15042-201ENSMUST00000120212 883 ntBASIC36,08■■■■□ 3,37
Scn5aQ9JJV9 Gm15045-201ENSMUST00000117359 883 ntBASIC35,46■■■■□ 3,27
Scn5aQ9JJV9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35,21■■■■□ 3,23
Scn5aQ9JJV9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35,13■■■■□ 3,21
Scn5aQ9JJV9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34,94■■■■□ 3,18
Scn5aQ9JJV9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34,86■■■■□ 3,17
Scn5aQ9JJV9 Gm23366-201ENSMUST00000175022 89 ntBASIC34,62■■■■□ 3,13
Scn5aQ9JJV9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34,5■■■■□ 3,11
Scn5aQ9JJV9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33,95■■■■□ 3,03
Scn5aQ9JJV9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33,88■■■■□ 3,01
Scn5aQ9JJV9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33,58■■■□□ 2,97
Scn5aQ9JJV9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33,57■■■□□ 2,96
Scn5aQ9JJV9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33,45■■■□□ 2,94
Scn5aQ9JJV9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33,33■■■□□ 2,93
Scn5aQ9JJV9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33,3■■■□□ 2,92
Scn5aQ9JJV9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33,21■■■□□ 2,91
Scn5aQ9JJV9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33,18■■■□□ 2,9
Scn5aQ9JJV9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33,14■■■□□ 2,9
Scn5aQ9JJV9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32,98■■■□□ 2,87
Scn5aQ9JJV9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32,97■■■□□ 2,87
Scn5aQ9JJV9 Gm25238-201ENSMUST00000174914 89 ntBASIC32,94■■■□□ 2,86
Scn5aQ9JJV9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32,93■■■□□ 2,86
Scn5aQ9JJV9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32,91■■■□□ 2,86
Scn5aQ9JJV9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32,91■■■□□ 2,86
Scn5aQ9JJV9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32,86■■■□□ 2,85
Scn5aQ9JJV9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32,64■■■□□ 2,82
Scn5aQ9JJV9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32,54■■■□□ 2,8
Scn5aQ9JJV9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32,46■■■□□ 2,79
Scn5aQ9JJV9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32,36■■■□□ 2,77
Scn5aQ9JJV9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32,21■■■□□ 2,75
Scn5aQ9JJV9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32,17■■■□□ 2,74
Scn5aQ9JJV9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32,09■■■□□ 2,73
Scn5aQ9JJV9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32,03■■■□□ 2,72
Scn5aQ9JJV9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31,96■■■□□ 2,71
Scn5aQ9JJV9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31,91■■■□□ 2,7
Scn5aQ9JJV9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31,81■■■□□ 2,68
Scn5aQ9JJV9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31,78■■■□□ 2,68
Scn5aQ9JJV9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31,69■■■□□ 2,66
Scn5aQ9JJV9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31,62■■■□□ 2,65
Scn5aQ9JJV9 Gm27325-201ENSMUST00000175467 74 ntBASIC31,62■■■□□ 2,65
Scn5aQ9JJV9 Psd-208ENSMUST00000224556 2034 ntBASIC31,56■■■□□ 2,64
Scn5aQ9JJV9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31,55■■■□□ 2,64
Scn5aQ9JJV9 Gm25262-201ENSMUST00000174934 133 ntBASIC31,51■■■□□ 2,63
Scn5aQ9JJV9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31,48■■■□□ 2,63
Scn5aQ9JJV9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31,47■■■□□ 2,63
Scn5aQ9JJV9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31,15■■■□□ 2,58
Scn5aQ9JJV9 Rab21-202ENSMUST00000218831 843 ntBASIC31,11■■■□□ 2,57
Scn5aQ9JJV9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31,1■■■□□ 2,57
Scn5aQ9JJV9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31,08■■■□□ 2,57
Scn5aQ9JJV9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31,06■■■□□ 2,56
Scn5aQ9JJV9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31,05■■■□□ 2,56
Scn5aQ9JJV9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31,04■■■□□ 2,56
Scn5aQ9JJV9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31,03■■■□□ 2,56
Scn5aQ9JJV9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31,01■■■□□ 2,55
Scn5aQ9JJV9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30,96■■■□□ 2,55
Scn5aQ9JJV9 Gm26115-201ENSMUST00000175605 87 ntBASIC30,93■■■□□ 2,54
Scn5aQ9JJV9 Gm8109-201ENSMUST00000194076 746 ntBASIC30,91■■■□□ 2,54
Scn5aQ9JJV9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30,86■■■□□ 2,53
Scn5aQ9JJV9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30,86■■■□□ 2,53
Scn5aQ9JJV9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30,86■■■□□ 2,53
Scn5aQ9JJV9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30,84■■■□□ 2,53
Scn5aQ9JJV9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30,79■■■□□ 2,52
Scn5aQ9JJV9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30,78■■■□□ 2,52
Scn5aQ9JJV9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30,78■■■□□ 2,52
Scn5aQ9JJV9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30,75■■■□□ 2,51
Scn5aQ9JJV9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30,73■■■□□ 2,51
Scn5aQ9JJV9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30,7■■■□□ 2,51
Scn5aQ9JJV9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30,7■■■□□ 2,5
Scn5aQ9JJV9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30,65■■■□□ 2,5
Scn5aQ9JJV9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30,61■■■□□ 2,49
Scn5aQ9JJV9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30,57■■■□□ 2,49
Scn5aQ9JJV9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30,56■■■□□ 2,48
Scn5aQ9JJV9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30,52■■■□□ 2,48
Scn5aQ9JJV9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30,51■■■□□ 2,48
Scn5aQ9JJV9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30,48■■■□□ 2,47
Scn5aQ9JJV9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30,46■■■□□ 2,47
Scn5aQ9JJV9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30,42■■■□□ 2,46
Scn5aQ9JJV9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30,39■■■□□ 2,46
Scn5aQ9JJV9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30,33■■■□□ 2,45
Scn5aQ9JJV9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30,28■■■□□ 2,44
Scn5aQ9JJV9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30,27■■■□□ 2,44
Scn5aQ9JJV9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30,15■■■□□ 2,42
Scn5aQ9JJV9 Gm17082-201ENSMUST00000166043 1091 ntBASIC30,14■■■□□ 2,42
Scn5aQ9JJV9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30,14■■■□□ 2,42
Scn5aQ9JJV9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30,12■■■□□ 2,41
Scn5aQ9JJV9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30,1■■■□□ 2,41
Scn5aQ9JJV9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30,08■■■□□ 2,41
Scn5aQ9JJV9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30,06■■■□□ 2,4
Scn5aQ9JJV9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30,05■■■□□ 2,4
Scn5aQ9JJV9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30,03■■■□□ 2,4
Scn5aQ9JJV9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30,01■■■□□ 2,4
Scn5aQ9JJV9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29,97■■■□□ 2,39
Scn5aQ9JJV9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29,95■■■□□ 2,39
Scn5aQ9JJV9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29,94■■■□□ 2,38
Scn5aQ9JJV9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29,94■■■□□ 2,38
Scn5aQ9JJV9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29,92■■■□□ 2,38
Retrieved 100 of 76,532 protein–RNA pairs in 35,7 ms