Protein–RNA interactions for Protein: F6VAN0

Atf6, Cyclic AMP-dependent transcription factor ATF-6 alpha, mousemouse

Predictions only

Length 656 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atf6F6VAN0 Gm25239-201ENSMUST00000174915 86 ntBASIC37.45■■■■□ 3.59
Atf6F6VAN0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
Atf6F6VAN0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
Atf6F6VAN0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Atf6F6VAN0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34■■■■□ 3.03
Atf6F6VAN0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
Atf6F6VAN0 Gm15042-201ENSMUST00000120212 883 ntBASIC33.28■■■□□ 2.92
Atf6F6VAN0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Atf6F6VAN0 Psd-208ENSMUST00000224556 2034 ntBASIC32.75■■■□□ 2.83
Atf6F6VAN0 Gm15045-201ENSMUST00000117359 883 ntBASIC32.64■■■□□ 2.82
Atf6F6VAN0 Gm24109-201ENSMUST00000175489 103 ntBASIC32.2■■■□□ 2.75
Atf6F6VAN0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
Atf6F6VAN0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.08■■■□□ 2.73
Atf6F6VAN0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Atf6F6VAN0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Atf6F6VAN0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Atf6F6VAN0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Atf6F6VAN0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Atf6F6VAN0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Atf6F6VAN0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Atf6F6VAN0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Atf6F6VAN0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Atf6F6VAN0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Atf6F6VAN0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Atf6F6VAN0 Gm23366-201ENSMUST00000175022 89 ntBASIC31.35■■■□□ 2.61
Atf6F6VAN0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Atf6F6VAN0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Atf6F6VAN0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.19■■■□□ 2.58
Atf6F6VAN0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Atf6F6VAN0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Atf6F6VAN0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Atf6F6VAN0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Atf6F6VAN0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
Atf6F6VAN0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.87■■■□□ 2.53
Atf6F6VAN0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Atf6F6VAN0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Atf6F6VAN0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Atf6F6VAN0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.55■■■□□ 2.48
Atf6F6VAN0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Atf6F6VAN0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Atf6F6VAN0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Atf6F6VAN0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.31■■■□□ 2.44
Atf6F6VAN0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Atf6F6VAN0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.11■■■□□ 2.41
Atf6F6VAN0 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.04■■■□□ 2.4
Atf6F6VAN0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Atf6F6VAN0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Atf6F6VAN0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Atf6F6VAN0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.9■■■□□ 2.38
Atf6F6VAN0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
Atf6F6VAN0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.77■■■□□ 2.36
Atf6F6VAN0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Atf6F6VAN0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Atf6F6VAN0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Atf6F6VAN0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Atf6F6VAN0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Atf6F6VAN0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
Atf6F6VAN0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Atf6F6VAN0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC29.45■■■□□ 2.3
Atf6F6VAN0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.41■■■□□ 2.3
Atf6F6VAN0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Atf6F6VAN0 Gm25238-201ENSMUST00000174914 89 ntBASIC29.37■■■□□ 2.29
Atf6F6VAN0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Atf6F6VAN0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Atf6F6VAN0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
Atf6F6VAN0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.31■■■□□ 2.28
Atf6F6VAN0 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.31■■■□□ 2.28
Atf6F6VAN0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.27■■■□□ 2.28
Atf6F6VAN0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.26■■■□□ 2.27
Atf6F6VAN0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Atf6F6VAN0 Gm27325-201ENSMUST00000175467 74 ntBASIC29.25■■■□□ 2.27
Atf6F6VAN0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.25■■■□□ 2.27
Atf6F6VAN0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Atf6F6VAN0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Atf6F6VAN0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Atf6F6VAN0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.04■■■□□ 2.24
Atf6F6VAN0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Atf6F6VAN0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
Atf6F6VAN0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Atf6F6VAN0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Atf6F6VAN0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Atf6F6VAN0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.82■■■□□ 2.2
Atf6F6VAN0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
Atf6F6VAN0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Atf6F6VAN0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Atf6F6VAN0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Atf6F6VAN0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Atf6F6VAN0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Atf6F6VAN0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Atf6F6VAN0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Atf6F6VAN0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.63■■■□□ 2.17
Atf6F6VAN0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.61■■■□□ 2.17
Atf6F6VAN0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Atf6F6VAN0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Atf6F6VAN0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Atf6F6VAN0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Atf6F6VAN0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.53■■■□□ 2.16
Atf6F6VAN0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
Atf6F6VAN0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.51■■■□□ 2.15
Atf6F6VAN0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms