Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm25239-201ENSMUST00000174915 86 ntBASIC42.49■■■■■ 4.39
Clp1Q99LI9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
Clp1Q99LI9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
Clp1Q99LI9 Gm24109-201ENSMUST00000175489 103 ntBASIC36.97■■■■□ 3.51
Clp1Q99LI9 Gm15042-201ENSMUST00000120212 883 ntBASIC36.83■■■■□ 3.49
Clp1Q99LI9 Gm15045-201ENSMUST00000117359 883 ntBASIC35.99■■■■□ 3.35
Clp1Q99LI9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.91■■■■□ 3.34
Clp1Q99LI9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
Clp1Q99LI9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.77■■■■□ 3.32
Clp1Q99LI9 Gm23366-201ENSMUST00000175022 89 ntBASIC35.45■■■■□ 3.27
Clp1Q99LI9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
Clp1Q99LI9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
Clp1Q99LI9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.56■■■■□ 3.12
Clp1Q99LI9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
Clp1Q99LI9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
Clp1Q99LI9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.26■■■■□ 3.08
Clp1Q99LI9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.23■■■■□ 3.07
Clp1Q99LI9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
Clp1Q99LI9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.1■■■■□ 3.05
Clp1Q99LI9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Clp1Q99LI9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
Clp1Q99LI9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Clp1Q99LI9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.67■■■□□ 2.98
Clp1Q99LI9 Gm25238-201ENSMUST00000174914 89 ntBASIC33.64■■■□□ 2.98
Clp1Q99LI9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.62■■■□□ 2.97
Clp1Q99LI9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.97
Clp1Q99LI9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Clp1Q99LI9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.33■■■□□ 2.93
Clp1Q99LI9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
Clp1Q99LI9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Clp1Q99LI9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.02■■■□□ 2.88
Clp1Q99LI9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.96■■■□□ 2.87
Clp1Q99LI9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
Clp1Q99LI9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
Clp1Q99LI9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.78■■■□□ 2.84
Clp1Q99LI9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
Clp1Q99LI9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.62■■■□□ 2.81
Clp1Q99LI9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.6■■■□□ 2.81
Clp1Q99LI9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Clp1Q99LI9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Clp1Q99LI9 Gm25262-201ENSMUST00000174934 133 ntBASIC32.38■■■□□ 2.77
Clp1Q99LI9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
Clp1Q99LI9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.26■■■□□ 2.75
Clp1Q99LI9 Gm27325-201ENSMUST00000175467 74 ntBASIC32.24■■■□□ 2.75
Clp1Q99LI9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
Clp1Q99LI9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.01■■■□□ 2.72
Clp1Q99LI9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.96■■■□□ 2.71
Clp1Q99LI9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Clp1Q99LI9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Clp1Q99LI9 Rab21-202ENSMUST00000218831 843 ntBASIC31.86■■■□□ 2.69
Clp1Q99LI9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.8■■■□□ 2.68
Clp1Q99LI9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.78■■■□□ 2.68
Clp1Q99LI9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
Clp1Q99LI9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Clp1Q99LI9 Gm26115-201ENSMUST00000175605 87 ntBASIC31.69■■■□□ 2.66
Clp1Q99LI9 Psd-208ENSMUST00000224556 2034 ntBASIC31.68■■■□□ 2.66
Clp1Q99LI9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Clp1Q99LI9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Clp1Q99LI9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.54■■■□□ 2.64
Clp1Q99LI9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Clp1Q99LI9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Clp1Q99LI9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Clp1Q99LI9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.46■■■□□ 2.63
Clp1Q99LI9 Gm8109-201ENSMUST00000194076 746 ntBASIC31.45■■■□□ 2.63
Clp1Q99LI9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
Clp1Q99LI9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.43■■■□□ 2.62
Clp1Q99LI9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.41■■■□□ 2.62
Clp1Q99LI9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Clp1Q99LI9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.19■■■□□ 2.58
Clp1Q99LI9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.18■■■□□ 2.58
Clp1Q99LI9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.18■■■□□ 2.58
Clp1Q99LI9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Clp1Q99LI9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Clp1Q99LI9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Clp1Q99LI9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.05■■■□□ 2.56
Clp1Q99LI9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Clp1Q99LI9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
Clp1Q99LI9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Clp1Q99LI9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Clp1Q99LI9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
Clp1Q99LI9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
Clp1Q99LI9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Clp1Q99LI9 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.79■■■□□ 2.52
Clp1Q99LI9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.77■■■□□ 2.52
Clp1Q99LI9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
Clp1Q99LI9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Clp1Q99LI9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Clp1Q99LI9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.66■■■□□ 2.5
Clp1Q99LI9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Clp1Q99LI9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.64■■■□□ 2.5
Clp1Q99LI9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.59■■■□□ 2.49
Clp1Q99LI9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.59■■■□□ 2.49
Clp1Q99LI9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Clp1Q99LI9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Clp1Q99LI9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Clp1Q99LI9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Clp1Q99LI9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Clp1Q99LI9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
Clp1Q99LI9 Gm24804-201ENSMUST00000174982 85 ntBASIC30.46■■■□□ 2.47
Clp1Q99LI9 Gm27322-201ENSMUST00000184007 104 ntBASIC30.46■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms