RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NUGGCQ68CJ6 796 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 OTOAQ7RTW8 1153 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CCDC185Q8N715 623 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 UMODL1Q5DID0 1318 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MSH4O15457 936 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 DDNO94850 711 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GLP2RO95838 553 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ERVK-9P63128 1117 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ERVK-24P63145 666 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GRSF1Q12849 480 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CEP78Q5JTW2 689 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 LZTR1Q8N653 840 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 TUBGCP3Q96CW5 907 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RACGAP1Q9H0H5 632 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RAD21L1Q9H4I0 556 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 AP3D1O14617 1153 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 KPNA5O15131 536 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CYP26A1O43174 497 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ALBP02768 609 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 HMGCRP04035 888 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RPL21P46778 160 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 USP4Q13107 963 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 PCBP1Q15365 356 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ALX1Q15699 326 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ADCK1Q86TW2 530 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FAM83AQ86UY5 434 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 DHX40Q8IX18 779 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GRAMD1CQ8IYS0 662 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CPA5Q8WXQ8 436 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FAM167BQ9BTA0 163 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MCCC2Q9HCC0 563 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ARIH1Q9Y4X5 557 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CDY2AQ9Y6F7 541 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CDY1Q9Y6F8 540 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ALKQ9UM73 1620 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MAGI3Q5TCQ9 1506 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ENDOD1O94919 500 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RPL9P32969 192 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CLCN6P51797 869 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SULT2A1Q06520 285 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ACVR2BQ13705 512 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SETD3Q86TU7 594 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RBM23Q86U06 439 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 TRAPPC5Q8IUR0 188 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 UBA3Q8TBC4 463 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RMND5BQ96G75 393 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SERPINB11Q96P15 392 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FRMD8Q9BZ67 464 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 DPY30Q9C005 99 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 FHDC1Q9C0D6 1143 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 POLMQ9NP87 494 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 KCNH7Q9NS40 1196 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CHORDC1Q9UHD1 332 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 STARD13Q9Y3M8 1113 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 TGM2P21980 687 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SERPINB3P29508 390 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 SOX6P35712 828 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CHKAP35790 457 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GPD2P43304 727 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GET4Q7L5D6 327 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 DNAJB3Q8WWF6 145 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 TMA16Q96EY4 203 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MKNK1Q9BUB5 465 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ELOVL6Q9H5J4 265 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 AGRPO00253 132 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 IL1BP01584 269 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 GHRP10912 638 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 TMED1Q13445 227 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CUL3Q13618 768 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 CYP2A13Q16696 494 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 NEK5Q6P3R8 708 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 LRRC8DQ7L1W4 858 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 P3H2Q8IVL5 708 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 MAGED4Q96JG8 741 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 C2orf49Q9BVC5 232 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 KLHL25Q9H0H3 589 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 METTL5Q9NRN9 209 aaKnown RBP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCN1A-217ENST00000637988 ALKBH4Q9NXW9 302 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 DNMT3LQ9UJW3 386 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 IQGAP3Q86VI3 1631 aa6.31□□□□□ -1.4
SCN1A-217ENST00000637988 RIMBP3CA6NJZ7 1639 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 RIMBP3BA6NNM3 1639 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 RIMBP3Q9UFD9 1639 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FGBP02675 491 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FEN1P39748 380 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF200P98182 395 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 KRT31Q15323 416 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 GPAT2Q6NUI2 795 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 RFFLQ8WZ73 363 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 NSUN4Q96CB9 384 aaKnown RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 FRMD8P1Q9BZ68 369 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-217ENST00000637988 WWP1Q9H0M0 922 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ZDHHC6Q9H6R6 413 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 LY9Q9HBG7 655 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 ENOPH1Q9UHY7 261 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 TBX20Q9UMR3 447 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 PCDHB2Q9Y5E7 798 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 CD163L1Q9NR16 1453 aa6.3□□□□□ -1.4
SCN1A-217ENST00000637988 RAMP2O60895 175 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms