RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 PNPLA8Q9NP80 782 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 FAM49BQ9NUQ9 324 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 OSER1Q9NX31 292 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 HMGXB4Q9UGU5 601 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 KLK13Q9UKR3 277 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 CIZ1Q9ULV3 898 aaPredicted RBP11.19□□□□□ -0.62
RFFL-209ENST00000581265 FRMD4BQ9Y2L6 1034 aa11.19□□□□□ -0.62
RFFL-209ENST00000581265 UPK3BL1B0FP48 263 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 UPK3BL2E5RIL1 263 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 AP5Z1O43299 807 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 HLA-DRAP01903 254 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 FAM200BP0CF97 657 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 IRF1P10914 325 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 HOXB2P14652 356 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 TYRP14679 529 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 TRIM21P19474 475 aaKnown RBP11.18□□□□□ -0.62
RFFL-209ENST00000581265 ITPKAP23677 461 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 PLA2G4AP47712 749 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 VAMP7P51809 220 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 MCCD1P59942 119 aaPredicted RBP11.18□□□□□ -0.62
RFFL-209ENST00000581265 ENPEPQ07075 957 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 GOLGA8FQ08AF8 430 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 GOLGA8DPQ0D2H9 430 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 NFIL3Q16649 462 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 CEP135Q66GS9 1140 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 GRAMD4Q6IC98 578 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 SPOPLQ6IQ16 392 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 SDE2Q6IQ49 451 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 ARMCX6Q7L4S7 300 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 GPRIN1Q7Z2K8 1008 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 CEP76Q8TAP6 659 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 CYFIP2Q96F07 1278 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 XPO6Q96QU8 1125 aaKnown RBP11.18□□□□□ -0.62
RFFL-209ENST00000581265 TWNKQ96RR1 684 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 GABRG3Q99928 467 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 BBS2Q9BXC9 721 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 NT5C1AQ9BXI3 368 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 CYP3A43Q9HB55 503 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 DNAJC17Q9NVM6 304 aaKnown RBP11.18□□□□□ -0.62
RFFL-209ENST00000581265 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.18□□□□□ -0.62
RFFL-209ENST00000581265 SLC6A14Q9UN76 642 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 PCDHA5Q9Y5H7 936 aa11.18□□□□□ -0.62
RFFL-209ENST00000581265 FRYQ5TBA9 3013 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 SETXQ7Z333 2677 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 PRRT4C9JH25 899 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 NEDD8-MDP1E9PL57 170 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 GFRA2O00451 464 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 ZBTB24O43167 697 aaPredicted RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 CYP26A1O43174 497 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 CALUO43852 315 aaPredicted RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 ZNF217O75362 1048 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 KIF20AO95235 890 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 HSP90AA1P07900 732 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 SERPINF2P08697 491 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 CISD3P0C7P0 127 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 RARGP13631 454 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 ENGP17813 658 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 ACO1P21399 889 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 ADORA2BP29275 332 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 PIK3CAP42336 1068 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 PSEN1P49768 467 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 KIF11P52732 1056 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 RPL6Q02878 288 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 SEMA3BQ13214 749 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 PKP1Q13835 747 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 DUOXA1Q1HG43 343 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 EGFLAMQ63HQ2 1017 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 Q6ZNB5 142 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 TPGS1Q6ZTW0 290 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 INTS8Q75QN2 995 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 PIP4P1Q86T03 277 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 CHPFQ8IZ52 775 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 IPO4Q8TEX9 1081 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 ACOX2Q99424 681 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 IMPG2Q9BZV3 1241 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 NMUR1Q9HB89 426 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 CAPN10Q9HC96 672 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.17□□□□□ -0.629e-9■■■■■ 111.8
RFFL-209ENST00000581265 CALCOCO1Q9P1Z2 691 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 DNMT3LQ9UJW3 386 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 LSM7Q9UK45 103 aaKnown RBP11.17□□□□□ -0.62
RFFL-209ENST00000581265 FBXO10Q9UK96 956 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 HPSEQ9Y251 543 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 GPSM3Q9Y4H4 160 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 USP3Q9Y6I4 520 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 IGF2RP11717 2491 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 PLXND1Q9Y4D7 1925 aa11.17□□□□□ -0.62
RFFL-209ENST00000581265 IGHV1OR15-9A0A0B4J2B8 117 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 A0A1B0GVL5 298 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 A0A1W2PQH9 124 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 H0Y626 953 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 CILPO75339 1184 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 RHOBTB3O94955 611 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 TRIM16O95361 564 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 PFKFB1P16118 471 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 NR2F2P24468 414 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 WASP42768 502 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 MAPK8P45983 427 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 GCLMP48507 274 aa11.16□□□□□ -0.62
RFFL-209ENST00000581265 DGKGP49619 791 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms