RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SRSF2Q01130 221 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 APBA1Q02410 837 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NIPAL4Q0D2K0 466 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 FAPQ12884 760 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 TRAP1Q12931 704 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 PPFIA1Q13136 1202 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 XRCC4Q13426 336 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PRKG1Q13976 671 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NFE2L1Q14494 772 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 MAPRE2Q15555 327 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CLUL1Q15846 466 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 GPR162Q16538 588 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NDUFA5Q16718 116 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 IMMTQ16891 758 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 PDCD4Q53EL6 469 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 CEP78Q5JTW2 689 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 WDR45BQ5MNZ6 344 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ARMC4Q5T2S8 1044 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 KIAA1614Q5VZ46 1190 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 RNF219Q5W0B1 726 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 TSHZ3Q63HK5 1081 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 FCRLBQ6BAA4 426 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CRIP3Q6Q6R5 217 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PTF1AQ7RTS3 328 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 KRT27Q7Z3Y8 459 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PHLDB2Q86SQ0 1253 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 XYLT1Q86Y38 959 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ZFPM1Q8IX07 1006 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 RHOT2Q8IXI1 618 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 FAM186BQ8IYM0 893 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CNBD1Q8NA66 436 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 SLC16A11Q8NCK7 471 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 MDM1Q8TC05 714 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 LPIN2Q92539 896 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 P3H4Q92791 437 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NELL1Q92832 810 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 STAMBPL1Q96FJ0 436 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 MED30Q96HR3 178 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CATSPER2Q96P56 530 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 UHRF1Q96T88 793 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 MNTQ99583 582 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CCDC28BQ9BUN5 200 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ACE2Q9BYF1 805 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 SCAND2PQ9GZW5 306 aaPredicted RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 ZCWPW1Q9H0M4 648 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 SIL1Q9H173 461 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 TRPV6Q9H1D0 765 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CARD9Q9H257 536 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CENPHQ9H3R5 247 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PLEKHA5Q9HAU0 1116 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NOD2Q9HC29 1040 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 SPON1Q9HCB6 807 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 XAB2Q9HCS7 855 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 FANCFQ9NPI8 374 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ZBTB40Q9NUA8 1239 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 ABCF3Q9NUQ8 709 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PIH1D1Q9NWS0 290 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 RMND1Q9NWS8 449 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 DNAJC28Q9NX36 388 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 CTNNAL1Q9UBT7 734 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PGAP2Q9UHJ9 254 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 HERC5Q9UII4 1024 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 AGO2Q9UKV8 859 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 RAB21Q9UL25 225 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 PLEKHG1Q9ULL1 1385 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NKTRP30414 1462 aaKnown RBP3.45□□□□□ -1.86
VPS35-208ENST00000568612 TEX14Q8IWB6 1497 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 IQGAP2Q13576 1575 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 LAMC3Q9Y6N6 1575 aa3.45□□□□□ -1.86
VPS35-208ENST00000568612 NUP160Q12769 1436 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 LRRC9Q6ZRR7 1453 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 A0A0J9YVX5 310 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CLRN2A0PK11 232 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 KRTAP23-1A1A580 65 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 DPPA5A6NC42 116 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PRSS47A8MTI9 375 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 BECN2A8MW95 431 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PRR5-ARHGAP8B1AHC4 643 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ERVV-2B6SEH9 535 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 KIF28PB7ZC32 967 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GOLGA8KD6RF30 607 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GOLGA8TH3BQL2 631 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TBX3O15119 743 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 STRNO43815 780 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TMEM127O75204 238 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TACC1O75410 805 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CSPG5O95196 566 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 EYA4O95677 639 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 BAG3O95817 575 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 APOEP02649 317 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 TUBBP07437 444 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GOLGA8HP0CJ92 632 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ALADP13716 330 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 OSMP13725 252 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 MTHFD2P13995 350 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 GLULP15104 373 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 ZKSCAN1P17029 563 aaPredicted RBP3.44□□□□□ -1.86
VPS35-208ENST00000568612 NAGAP17050 411 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 CTRB1P17538 263 aa3.44□□□□□ -1.86
VPS35-208ENST00000568612 PRKACBP22694 351 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms