RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EDAQ92838 391 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 GLG1Q92896 1179 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 EIF3CQ99613 913 aaKnown RBP8.34□□□□□ -1.07
LSM1-202ENST00000520286 GLOD4Q9HC38 313 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 ALG13Q9NP73 1137 aaKnown RBP8.34□□□□□ -1.07
LSM1-202ENST00000520286 IRAK4Q9NWZ3 460 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 DNAJC16Q9Y2G8 782 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 DNMBPQ6XZF7 1577 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 LMTK3Q96Q04 1460 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 FAM90A20PA6NIJ5 464 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 PRSS47A8MTI9 375 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 CTIFO43310 598 aaKnown RBP8.33□□□□□ -1.08
LSM1-202ENST00000520286 PRICKLE3O43900 615 aaPredicted RBP8.33□□□□□ -1.08
LSM1-202ENST00000520286 TBX18O95935 607 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 TMEM225BP0DP42 221 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 EIF4A1P60842 406 aaKnown RBP8.33□□□□□ -1.08
LSM1-202ENST00000520286 MTAPQ13126 283 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 PDCLQ13371 301 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 CTXN3Q4LDR2 81 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 ZNF569Q5MCW4 686 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 DTX2Q86UW9 622 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 CAND1Q86VP6 1230 aaKnown RBP8.33□□□□□ -1.08
LSM1-202ENST00000520286 TCP11L2Q8N4U5 519 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 B3GALNT2Q8NCR0 500 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 ADOQ96SZ5 270 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 REEP2Q9BRK0 252 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 PAAF1Q9BRP4 392 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 OSBPL5Q9H0X9 879 aaPredicted RBP8.33□□□□□ -1.08
LSM1-202ENST00000520286 XYLT2Q9H1B5 865 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 PREBQ9HCU5 417 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 ARHGAP26Q9UNA1 814 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 PCDHB7Q9Y5E2 793 aa8.33□□□□□ -1.08
LSM1-202ENST00000520286 SYNJ1O43426 1573 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 GXYLT2A0PJZ3 443 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 STX16-NPEPL1H3BU86 382 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 STX16O14662 325 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 CDKL5O76039 1030 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 HNRNPMP52272 730 aaKnown RBP eCLIP8.32□□□□□ -1.08
LSM1-202ENST00000520286 TOB2Q14106 344 aaPredicted RBP8.32□□□□□ -1.08
LSM1-202ENST00000520286 BEAN1Q3B7T3 259 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 ATG16L1Q676U5 607 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 CCDC144NLQ6NUI1 221 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 ARMC6Q6NXE6 501 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 MZT2BQ6NZ67 158 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 DSTYKQ6XUX3 929 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 KRT27Q7Z3Y8 459 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 LRRC71Q8N4P6 559 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 USP38Q8NB14 1042 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 CPEB3Q8NE35 698 aaKnown RBP8.32□□□□□ -1.08
LSM1-202ENST00000520286 REXO5Q96IC2 774 aaKnown RBP8.32□□□□□ -1.08
LSM1-202ENST00000520286 ABHD16BQ9H3Z7 469 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 TRIM36Q9NQ86 728 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 JAG2Q9Y219 1238 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 ZBTB1Q9Y2K1 713 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 SYNJ2O15056 1496 aa8.32□□□□□ -1.08
LSM1-202ENST00000520286 MAGI1Q96QZ7 1491 aaPredicted RBP8.32□□□□□ -1.08
LSM1-202ENST00000520286 A1L4Q6 167 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 SLC38A8A6NNN8 435 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 PSMD9O00233 223 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 KIAA0355O15063 1070 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 FAM20BO75063 409 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 RNASEH2AO75792 299 aaKnown RBP8.31□□□□□ -1.08
LSM1-202ENST00000520286 NDUFA10O95299 355 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 C8AP07357 584 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 CYP21A2P08686 494 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 HNRNPA1P09651 372 aaKnown RBP eCLIP8.31□□□□□ -1.08
LSM1-202ENST00000520286 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.31□□□□□ -1.08
LSM1-202ENST00000520286 EIF2B5Q13144 721 aaKnown RBP8.31□□□□□ -1.08
LSM1-202ENST00000520286 ST3GAL2Q16842 350 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 TBRG1Q3YBR2 411 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 L1TD1Q5T7N2 865 aaKnown RBP8.31□□□□□ -1.08
LSM1-202ENST00000520286 RAB11FIP4Q86YS3 637 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 SOCS4Q8WXH5 440 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 ST8SIA4Q92187 359 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 BLOC1S4Q9NUP1 217 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 TMLHEQ9NVH6 421 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 BAG5Q9UL15 447 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 GRIN2BQ13224 1484 aa8.31□□□□□ -1.08
LSM1-202ENST00000520286 LOC105369274A0A096LPK9 316 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 LOC102723532A0A0G2JNH3 316 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 SLC16A3O15427 465 aaKnown RBP8.3□□□□□ -1.08
LSM1-202ENST00000520286 TSPAN3O60637 253 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 HSP90AA1P07900 732 aaKnown RBP8.3□□□□□ -1.08
LSM1-202ENST00000520286 DDX6P26196 483 aaKnown RBP eCLIP8.3□□□□□ -1.08
LSM1-202ENST00000520286 ITIH3Q06033 890 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 SEMA3BQ13214 749 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 BFSP2Q13515 415 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 ICAM4Q14773 271 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 SLC9C2Q5TAH2 1124 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 FAM90A2PQ658T7 463 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 SYNE3Q6ZMZ3 975 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 C4orf50Q6ZRC1 276 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 RASGRP2Q7LDG7 609 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 MAVSQ7Z434 540 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 OR4N4Q8N0Y3 316 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 OVCA2Q8WZ82 227 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 ZBTB10Q96DT7 871 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 KTI12Q96EK9 354 aaPredicted RBP8.3□□□□□ -1.08
LSM1-202ENST00000520286 WWC2-AS2Q96NR7 200 aa8.3□□□□□ -1.08
LSM1-202ENST00000520286 FMNL2Q96PY5 1086 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms