RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FAM35AQ86V20 835 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CCDC25Q86WR0 208 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 SPATA18Q8TC71 538 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 EPS8L3Q8TE67 593 aaKnown RBP12.67□□□□□ -0.38
HDAC6-230ENST00000488543 KCTD13Q8WZ19 329 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 PCED1BQ96HM7 432 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 SEMA4AQ9H3S1 761 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 TMEM30AQ9NV96 361 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 MARCH5Q9NX47 278 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 EFR3BQ9Y2G0 817 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 PATJQ8NI35 1801 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 TP73O15350 636 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 IVDP26440 423 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 PTPN9P43378 593 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CACNA2D1P54289 1103 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 ATP11AP98196 1134 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CDO1Q16878 200 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 EMC10Q5UCC4 262 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 DRICH1Q6PGQ1 229 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-230ENST00000488543 SYDE1Q6ZW31 735 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CCDC13Q8IYE1 715 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 ZMIZ2Q8NF64 920 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 ATL2Q8NHH9 583 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 FAM172AQ8WUF8 416 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 NDRG1Q92597 394 aaKnown RBP12.67□□□□□ -0.38
HDAC6-230ENST00000488543 HSPH1Q92598 858 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 KCNK16Q96T55 309 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 PKMYT1Q99640 499 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 SMOQ99835 787 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 MED10Q9BTT4 135 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 KRT82Q9NSB4 513 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CXXC1Q9P0U4 656 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-230ENST00000488543 ADAM28Q9UKQ2 775 aa12.67□□□□□ -0.38
HDAC6-230ENST00000488543 CEP290O15078 2479 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 ZBBXA8MT70 800 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 HOXA2O43364 376 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 PPFIA2O75334 1257 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 SDC4P31431 198 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 HDAC4P56524 1084 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 ADIGQ0VDE8 80 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 SLC29A2Q14542 456 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 FAM171A1Q5VUB5 890 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 BBS12Q6ZW61 710 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 CENPIQ92674 756 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 DDX23Q9BUQ8 820 aaKnown RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 CWH43Q9H720 699 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 CD248Q9HCU0 757 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 IL23AQ9NPF7 189 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 PRKAG2Q9UGJ0 569 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 DNPEPQ9ULA0 475 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 ZMYND8Q9ULU4 1186 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 FNDC1Q4ZHG4 1894 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 FAM200BP0CF97 657 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 PAX3P23760 479 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 IFNAR2P48551 515 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 PMS2P54278 862 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 YWHAHQ04917 246 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 MTMR3Q13615 1198 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 PPP1R7Q15435 360 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 FAM171BQ6P995 826 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 METTL23Q86XA0 190 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 GRK7Q8WTQ7 553 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 ART4Q93070 314 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 SEC16BQ96JE7 1060 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 NGRNQ9NPE2 291 aaKnown RBP12.66□□□□□ -0.38
HDAC6-230ENST00000488543 ALPK3Q96L96 1907 aa12.66□□□□□ -0.38
HDAC6-230ENST00000488543 AP1G2O75843 785 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 CHN1P15882 459 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 PCSK1P29120 753 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 NDUFV1P49821 464 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 MNAT1P51948 309 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 MAP3K7CLP57077 242 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 OASLQ15646 514 aaKnown RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 C6orf89Q6UWU4 347 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 LRRC43Q8N309 656 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 KCTD6Q8NC69 237 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 HAUS1Q96CS2 278 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 CCDC114Q96M63 670 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 PCDHB8Q9UN66 801 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 COL4A4P53420 1690 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 HHLA1C9JL84 531 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 TMEM189-UBE2V1I3L0A0 370 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 PRPSAP2O60256 369 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 AMHP03971 560 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 KLRC2P26717 231 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 GBP1P32455 592 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 ALDH7A1P49419 539 aaKnown RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 MMRN1Q13201 1228 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 DPYSL3Q14195 570 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 TRIP13Q15645 432 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 INTS6LQ5JSJ4 861 aaKnown RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 AGBL2Q5U5Z8 902 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 OTUD1Q5VV17 481 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 GPRIN1Q7Z2K8 1008 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 ARFGAP2Q8N6H7 521 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 SLC35B2Q8TB61 432 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 TEKT4Q8WW24 435 aa12.65□□□□□ -0.38
HDAC6-230ENST00000488543 NKD2Q969F2 451 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-230ENST00000488543 MYLPFQ96A32 169 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms