RNA–Protein interactions for RNA: ENST00000466969.1

UBR4-210, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-210	ENST00000466969	CD38	P28907	300 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	MATR3	P43243	847 aa	Known RBP eCLIP	13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	RXRG	P48443	463 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	CDH8	P55286	799 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	KCNAB2	Q13303	367 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	ZNF211	Q13398	564 aa	Predicted RBP	13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	PDIA5	Q14554	519 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	SPATA1	Q5VX52	437 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	C9orf57	Q5W0N0	161 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	BBS7	Q8IWZ6	715 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	ORAI3	Q9BRQ5	295 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	BBS2	Q9BXC9	721 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	GZF1	Q9H116	711 aa	Predicted RBP	13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	DKK3	Q9UBP4	350 aa		13.44	□□□□□ -0.26
UBR4-210	ENST00000466969	ZFC3H1	O60293	1989 aa	Known RBP	13.43	□□□□□ -0.26
UBR4-210	ENST00000466969		A0A1W2PPC4	97 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	LACTBL1	A8MY62	500 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	TOM1L1	O75674	476 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	OAS1	P00973	400 aa	Known RBP	13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	WNT1	P04628	370 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	CHML	P26374	656 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	C1QL3	Q5VWW1	255 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	DENND5B	Q6ZUT9	1274 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	CHD1L	Q86WJ1	897 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	UCMA	Q8WVF2	138 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	ATXN7L3B	Q96GX2	97 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	PRR11	Q96HE9	360 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	TSPAN18	Q96SJ8	248 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	CUEDC1	Q9NWM3	386 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	WDR35	Q9P2L0	1181 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	PCDHGA4	Q9Y5G9	962 aa		13.43	□□□□□ -0.26
UBR4-210	ENST00000466969	PTPRJ	Q12913	1337 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969		A0A1W2PNU3	283 aa	Predicted RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	PIR	O00625	290 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	TRIM38	O00635	465 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	CLDN3	O15551	220 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	MTSS1	O43312	755 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	EPHX1	P07099	455 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	GP1BA	P07359	652 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	TAF6	P49848	677 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	PEX3	P56589	373 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	CYP4F2	P78329	520 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	SRSF6	Q13247	344 aa	Known RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	HDAC1	Q13547	482 aa	Predicted RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	NAA30	Q147X3	362 aa	Predicted RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	E2F5	Q15329	346 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	CFAP221	Q4G0U5	840 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	SLC45A4	Q5BKX6	768 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	MANEA	Q5SRI9	462 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	KIAA0895L	Q68EN5	471 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	GALNT17	Q6IS24	598 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	TMC6	Q7Z403	805 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	C14orf80	Q86SX3	495 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	WDR36	Q8NI36	951 aa	Known RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	MAPK15	Q8TD08	544 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	FUCA2	Q9BTY2	467 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	ERVMER34-1	Q9H9K5	563 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	SGK2	Q9HBY8	427 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	SEPT10	Q9P0V9	454 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	TUBD1	Q9UJT1	453 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	GTF3C4	Q9UKN8	822 aa		13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	RP1L1	Q8IWN7	2480 aa	Predicted RBP	13.42	□□□□□ -0.26
UBR4-210	ENST00000466969	MTOR	P42345	2549 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969		A0A1B0GVM2	712 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	RTN2	O75298	545 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	VPS4B	O75351	444 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	IGHV4-34	P06331	123 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	ITGA2B	P08514	1039 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	EXOSC10	Q01780	885 aa	Known RBP	13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	STRN3	Q13033	797 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	ENPP2	Q13822	863 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	TGIF1	Q15583	401 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	INTS6L	Q5JSJ4	861 aa	Known RBP	13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	CREB3L3	Q68CJ9	461 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	BORA	Q6PGQ7	559 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	TAS1R3	Q7RTX0	852 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	OR2T3	Q8NH03	318 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	NANOS1	Q8WY41	292 aa	Known RBP	13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	FAM212A	Q96EL1	285 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	SPATA17	Q96L03	361 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	ACBD6	Q9BR61	282 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	LRWD1	Q9UFC0	647 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	VPS4A	Q9UN37	437 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	TCHH	Q07283	1943 aa		13.41	□□□□□ -0.26
UBR4-210	ENST00000466969	PLXNA2	O75051	1894 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	FAM47DP	A6NHR8	397 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	TLR4	O00206	839 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	LZTS3	O60299	673 aa	Predicted RBP	13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	SDC3	O75056	442 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	DDAH2	O95865	285 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	CKMT1A	P12532	417 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	ANXA13	P27216	316 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	NPTX2	P47972	431 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	POLE2	P56282	527 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	NXPH1	P58417	271 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	USP46	P62068	366 aa		13.4	□□□□□ -0.26
UBR4-210	ENST00000466969	TPGS1	Q6ZTW0	290 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms