RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 HALP42357 657 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 NFYCQ13952 458 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 NTRK3Q16288 839 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 OVOS1Q6IE37 1185 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 SNX13Q9Y5W8 968 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 PRR23D1E9PI22 279 aaPredicted RBP17.68■□□□□ 0.42
PTPRF-209ENST00000438120 PRR23D2P0DMB1 279 aaPredicted RBP17.68■□□□□ 0.42
PTPRF-209ENST00000438120 SCUBE3Q8IX30 993 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 ARRDC4Q8NCT1 418 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 IMPAD1Q9NX62 359 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 DSEQ9UL01 958 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 RNF103O00237 685 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 USP1O94782 785 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 CRTAMO95727 393 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 GSNP06396 782 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 PLCL1Q15111 1095 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 KDM7AQ6ZMT4 941 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 ABRAQ8N0Z2 381 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 EXD1Q8NHP7 514 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 SLC5A5Q92911 643 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 PHF21BQ96EK2 531 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 FRMD8P1Q9BZ68 369 aaPredicted RBP17.68■□□□□ 0.42
PTPRF-209ENST00000438120 DLGAP2Q9P1A6 1054 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 AK9Q5TCS8 1911 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 CCDC159P0C7I6 412 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 POU1F1P28069 291 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 CNTN2Q02246 1040 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 CENPLQ8N0S6 344 aaPredicted RBP17.68■□□□□ 0.42
PTPRF-209ENST00000438120 VMP1Q96GC9 406 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 MAGEB18Q96M61 343 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 ACOX2Q99424 681 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 VANGL2Q9ULK5 521 aa17.68■□□□□ 0.42
PTPRF-209ENST00000438120 SMNDC1O75940 238 aaKnown RBP eCLIP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 PCDH8O95206 1070 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 PARNO95453 639 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 PRKCQQ04759 706 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ERMARDQ5T6L9 678 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 SEL1L3Q68CR1 1132 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 CES3Q6UWW8 571 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ZBTB45Q96K62 511 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 HNRNPRO43390 633 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 KATNA1O75449 491 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 SLITRK3O94933 977 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ATXN3LQ9H3M9 355 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 TMBIM4Q9HC24 238 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 DDX4Q9NQI0 724 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 TCRBV5S4A2TA0A5A2 114 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 RNASEH1O60930 286 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 FGFR1P11362 822 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 RARGP13631 454 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 MPP3Q13368 585 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ANGPT1Q15389 498 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ALFQ53S48 1182 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 RD3Q7Z3Z2 195 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 MTDHQ86UE4 582 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 OLFML3Q9NRN5 406 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 GTF2A1LQ9UNN4 478 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 HOXA2O43364 376 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF682O95780 498 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 IL1R1P14778 569 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ACTRT1Q8TDG2 376 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 SEMA4DQ92854 862 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ZMAT2Q96NC0 199 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 TMEM120AQ9BXJ8 343 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 GLIS2Q9BZE0 524 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 DMGDHQ9UI17 866 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 A8MX80 341 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 MICAL2O94851 1124 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 STAU1O95793 577 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 GLI1P08151 1106 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 TDRD5Q8NAT2 981 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 P2RX7Q99572 595 aaKnown RBP17.67■□□□□ 0.42
PTPRF-209ENST00000438120 APPL1Q9UKG1 709 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ITGA11Q9UKX5 1188 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 ACOT9Q9Y305 439 aa17.67■□□□□ 0.42
PTPRF-209ENST00000438120 SERPINI2O75830 405 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 VIL1P09327 827 aaKnown RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 RARRES1P49788 294 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 FAM171A1Q5VUB5 890 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 HERC6Q8IVU3 1022 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 MCOLN2Q8IZK6 566 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 BBS2Q9BXC9 721 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CD248Q9HCU0 757 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 NUDT5Q9UKK9 219 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 BAIAP3O94812 1187 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 RPS7P62081 194 aaKnown RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 ZNF606Q8WXB4 792 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 MED8Q96G25 268 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 PLA2G4CQ9UP65 541 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 DYRK1BQ9Y463 629 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 LSM8O95777 96 aaKnown RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 SLC26A2P50443 739 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CYLC2Q14093 348 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 SLC26A11Q86WA9 606 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CCNJLQ8IV13 435 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 DNERQ8NFT8 737 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 NOD2Q9HC29 1040 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 TLR8Q9NR97 1041 aaKnown RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 BARX2Q9UMQ3 279 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 WDR27A2RRH5 827 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms