RNA–Protein interactions for RNA: ENST00000414057.6

SCAMP4-204, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 1 (best)

Gene SCAMP4, Length 1,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-204ENST00000414057 TTC16Q8NEE8 873 aa17.82■□□□□ 0.44
SCAMP4-204ENST00000414057 PDZD8Q8NEN9 1154 aa17.82■□□□□ 0.44
SCAMP4-204ENST00000414057 DPEP3Q9H4B8 488 aa17.82■□□□□ 0.44
SCAMP4-204ENST00000414057 SMG5Q9UPR3 1016 aaKnown RBP17.82■□□□□ 0.44
SCAMP4-204ENST00000414057 CNTN6Q9UQ52 1028 aa17.82■□□□□ 0.44
SCAMP4-204ENST00000414057 KRT86O43790 486 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 RTN3O95197 1032 aaPredicted RBP17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 FOXK2Q01167 660 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 USP4Q13107 963 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 GAS6Q14393 721 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 FBXO43Q4G163 708 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 KIAA1328Q86T90 577 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 ZNF677Q86XU0 584 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 NUP93Q8N1F7 819 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 TTC39CQ8N584 583 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 CCDC26Q8TAB7 109 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 SH3RF2Q8TEC5 729 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 KAT5Q92993 513 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 DNAI2Q9GZS0 605 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 SMYD3Q9H7B4 428 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 ECT2Q9H8V3 914 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 APOBEC3GQ9HC16 384 aaKnown RBP17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 GMEB2Q9UKD1 530 aa17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 REXO2Q9Y3B8 237 aaKnown RBP17.81■□□□□ 0.44
SCAMP4-204ENST00000414057 F5P12259 2224 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 PTPRZ1P23471 2315 aaPredicted RBP17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 C2orf78A6NCI8 922 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 USP8P40818 1118 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 CDH8P55286 799 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 USP46P62068 366 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 Q6ZS52 159 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 LONP2Q86WA8 852 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 KIAA2013Q8IYS2 634 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 OVCA2Q8WZ82 227 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 SLC22A12Q96S37 553 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 P2RY13Q9BPV8 354 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 SYT11Q9BT88 431 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 MED10Q9BTT4 135 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 B3GNT5Q9BYG0 378 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 ZNF518BQ9C0D4 1074 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 MYO1AQ9UBC5 1043 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 ADAMTS1Q9UHI8 967 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 NME7Q9Y5B8 376 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 PCDHA13Q9Y5I0 950 aa17.8■□□□□ 0.44
SCAMP4-204ENST00000414057 FANCMQ8IYD8 2048 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 ZNF840PA6NDX5 716 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 NFATC1O95644 943 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 ABL1P00519 1130 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 PNMA6AP0CW24 399 aaPredicted RBP17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 ARSAP15289 507 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 YWHAQP27348 245 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 HOXA6P31267 233 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 GJA4P35212 333 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 MAGEA1P43355 309 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 SLC7A9P82251 487 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 GFPT1Q06210 699 aaPredicted RBP17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 KIF5AQ12840 1032 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 TAF10Q12962 218 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 SPOPLQ6IQ16 392 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 UNC93AQ86WB7 457 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 DDX42Q86XP3 938 aaKnown RBP eCLIP17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 SMARCD1Q96GM5 515 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 C16orf45Q96MC5 204 aaPredicted RBP17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 AGPAT1Q99943 283 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 CYP3A43Q9HB55 503 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 COMMD8Q9NX08 183 aa17.79■□□□□ 0.44
SCAMP4-204ENST00000414057 CFAP54Q96N23 3096 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 A0A087X0T9 212 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 OTOL1A6NHN0 477 aaPredicted RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 SLC9A3R1O14745 358 aaPredicted RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 PJA2O43164 708 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 FAM228BP0C875 321 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 KRT5P13647 590 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 ACO1P21399 889 aaKnown RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 TNFAIP3P21580 790 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 IFRD2Q12894 506 aaPredicted RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 DNTTIP2Q5QJE6 756 aaKnown RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 SCARA5Q6ZMJ2 495 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 DCLK2Q8N568 766 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 UBR7Q8N806 425 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 SLC30A5Q8TAD4 765 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 RIN3Q8TB24 985 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 EPS8L1Q8TE68 723 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 CD101Q93033 1021 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 DMAP1Q9NPF5 467 aaPredicted RBP17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.78■□□□□ 0.449e-8■■■■■ 72.1
SCAMP4-204ENST00000414057 NAGPAQ9UK23 515 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 INTUQ9ULD6 942 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 WNT6Q9Y6F9 365 aa17.78■□□□□ 0.44
SCAMP4-204ENST00000414057 K7ESF4 209 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 CLDN5O00501 218 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 CYP26A1O43174 497 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 KIF5CO60282 957 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 TNNT1P13805 278 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 CYP11B1P15538 503 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 SDHBP21912 280 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 ASPAP45381 313 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 RAP1GAPP47736 663 aa17.77■□□□□ 0.44
SCAMP4-204ENST00000414057 GALK1P51570 392 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms