RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DCTN2Q13561 401 aaKnown RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 C1orf220Q5T0J3 134 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SAPCD2Q86UD0 394 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ALLCQ8N6M5 410 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SEC14L1Q92503 715 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 OTUD5Q96G74 571 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 CCDC68Q9H2F9 335 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ACAD9Q9H845 621 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 PLCH1Q4KWH8 1693 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 APOL1O14791 398 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 LYPLA1O75608 230 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ASMTLO95671 621 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF554Q86TJ5 538 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 EIF2AQ9BY44 585 aaKnown RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ADA2Q9NZK5 511 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SLC24A2Q9UI40 661 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SHOC2Q9UQ13 582 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ABCA3Q99758 1704 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 MT-CO1P00395 513 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 MAPTP10636 758 aaKnown RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 STMN1P16949 149 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SERPINB5P36952 375 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SLC12A2P55011 1212 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SLC34A1Q06495 639 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 RIPK1Q13546 671 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 APLFQ8IW19 511 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 SCUBE3Q8IX30 993 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 TMEM130Q8N3G9 435 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 RYBPQ8N488 228 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 ALKBH8Q96BT7 664 aaKnown RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 RABL2AQ9UBK7 228 aaPredicted RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 DKK3Q9UBP4 350 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 BLOC1S6Q9UL45 172 aa12.34□□□□□ -0.43
HMGB1-206ENST00000405805 DDX60Q8IY21 1712 aaKnown RBP12.34□□□□□ -0.43
HMGB1-206ENST00000405805 CLPTM1O96005 669 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 PGK2P07205 417 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 TPBGLP0DKB5 382 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 GLRBP48167 497 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 TRPC1P48995 793 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 GTF2A2P52657 109 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 POU5F1BQ06416 359 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 C1QBPQ07021 282 aaKnown RBP12.33□□□□□ -0.43
HMGB1-206ENST00000405805 LAYNQ6UX15 382 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 ACOT1Q86TX2 421 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 TMA16Q96EY4 203 aaKnown RBP12.33□□□□□ -0.43
HMGB1-206ENST00000405805 FOXP3Q9BZS1 431 aa12.33□□□□□ -0.43
HMGB1-206ENST00000405805 hCG_1818297A0A087WSY0 165 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TCRBV9S1A1TA0A576 114 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 GPC4O75487 556 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 PSMG1O95456 288 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TOP3BO95985 862 aaKnown RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 NEK2P51955 445 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 DPYSL3Q14195 570 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 MSS51Q4VC12 460 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SLC45A4Q5BKX6 768 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 EMC10Q5UCC4 262 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 KIF12Q96FN5 646 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 PRR11Q96HE9 360 aaPredicted RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 ZFYVE19Q96K21 471 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 CNBD2Q96M20 576 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 CCT7Q99832 543 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TEX13BQ9BXU2 312 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 CADM1Q9BY67 442 aaKnown RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SELENONQ9NZV5 590 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 APPL1Q9UKG1 709 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TLK1Q9UKI8 766 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 ARHGAP26Q9UNA1 814 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 AP3B1O00203 1094 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 PROCP04070 461 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TCF7P36402 384 aaPredicted RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 OCA2Q04671 838 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TTC39BQ5VTQ0 682 aaPredicted RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 DLK2Q6UY11 383 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 ZC3H3Q8IXZ2 948 aaKnown RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 USP33Q8TEY7 942 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 WNK4Q96J92 1243 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 MMP19Q99542 508 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 UBE2OQ9C0C9 1292 aaKnown RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 PARVBQ9HBI1 364 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 UBP1Q9NZI7 540 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 AK5Q9Y6K8 562 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 MYPNQ86TC9 1320 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 MYH11P35749 1972 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 A0A0B4J269 797 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SLC4A1P02730 911 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 OCM2P0CE71 109 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 OCMP0CE72 109 aaPredicted RBP12.33□□□□□ -0.44
HMGB1-206ENST00000405805 ITKQ08881 620 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 CYP1B1Q16678 543 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SH3PXD2AQ5TCZ1 1133 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SLC26A11Q86WA9 606 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 FAM131BQ86XD5 332 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 MAB21L3Q8N8X9 362 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TMEM109Q9BVC6 243 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 TXLNGYQ9BZA5 131 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 SLC5A4Q9NY91 659 aa12.33□□□□□ -0.44
HMGB1-206ENST00000405805 ALOX15BO15296 676 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 GSC2O15499 205 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 HMGCRP04035 888 aa12.32□□□□□ -0.44
HMGB1-206ENST00000405805 CDK16Q00536 496 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms