RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 MAN1C1Q9NR34 630 aa14.36□□□□□ -0.11
SDC1-202ENST00000381150 ARHGEF4Q9NR80 690 aa14.36□□□□□ -0.11
SDC1-202ENST00000381150 LZTS1Q9Y250 596 aa14.36□□□□□ -0.11
SDC1-202ENST00000381150 IGKV6D-21A0A0A0MT36 114 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 PSTPIP1O43586 416 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 PEX10O60683 326 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 STAMBPO95630 424 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 KCNA4P22459 653 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 CRABP2P29373 138 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 CNTN2Q02246 1040 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 ATG16L1Q676U5 607 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 LRRC8BQ6P9F7 803 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 NCAPG2Q86XI2 1143 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 RNF168Q8IYW5 571 aaPredicted RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 ACSS3Q9H6R3 686 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 ACSS2Q9NR19 701 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 PIH1D1Q9NWS0 290 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 APOBEC2Q9Y235 224 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 CENPFP49454 3210 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 H7C0C1 242 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 NOP56O00567 594 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 AIM2O14862 343 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 C4BPAP04003 597 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 UNGP13051 313 aaPredicted RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 RPL22P35268 128 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 ATP5OP48047 213 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 RPL10AP62906 217 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 KRT72Q14CN4 511 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 NADK2Q4G0N4 442 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 DARS2Q6PI48 645 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 ADGRD1Q6QNK2 874 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 UNC45BQ8IWX7 931 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 RCOR2Q8IZ40 523 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 DCAKDQ8WVC6 231 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 FAF2Q96CS3 445 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 SIKE1Q9BRV8 207 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 PPP1R1BQ9UD71 204 aaPredicted RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 DNAJC16Q9Y2G8 782 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 USP2O75604 605 aaPredicted RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 CD19P15391 556 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 STX3Q13277 289 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 CYLC2Q14093 348 aaPredicted RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 EML3Q32P44 896 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 MTERF2Q49AM1 385 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 TRIM42Q8IWZ5 723 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 KATNAL2Q8IYT4 538 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 ALKBH8Q96BT7 664 aaKnown RBP14.35□□□□□ -0.11
SDC1-202ENST00000381150 GPRC5DQ9NZD1 345 aa14.35□□□□□ -0.11
SDC1-202ENST00000381150 PTPRJQ12913 1337 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 EXTL3O43909 919 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 MAGEC1O60732 1142 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 ZC3H11AO75152 810 aaKnown RBP eCLIP14.34□□□□□ -0.11
SDC1-202ENST00000381150 EDN1P05305 212 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 ARL2P36404 184 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 EMC2Q15006 297 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 PDK1Q15118 436 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 ZACNQ401N2 412 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 PABPC1LQ4VXU2 614 aaKnown RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 KLHDC10Q6PID8 442 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 B3GNT6Q6ZMB0 384 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 PDSS2Q86YH6 399 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 WDR75Q8IWA0 830 aaKnown RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 EMC1Q8N766 993 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 FAM172AQ8WUF8 416 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 DGCR14Q96DF8 476 aaKnown RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 LRGUKQ96M69 825 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 PCYT2Q99447 389 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 PORCNQ9H237 461 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 GGA3Q9NZ52 723 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 DOLKQ9UPQ8 538 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 SHOC2Q9UQ13 582 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 A0A0G2JMZ2 1700 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 ZNF189O75820 626 aaPredicted RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 PIGRP01833 764 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 COPAP53621 1224 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 TRIML2Q8N7C3 387 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 DNERQ8NFT8 737 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 TMEM143Q96AN5 459 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 TRIM11Q96F44 468 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 ATXN7L3BQ96GX2 97 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 NIFKQ9BYG3 293 aaKnown RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 FOXP3Q9BZS1 431 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 C20orf27Q9GZN8 174 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 RAB6BQ9NRW1 208 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 MAGED2Q9UNF1 606 aaPredicted RBP14.34□□□□□ -0.11
SDC1-202ENST00000381150 PAPPA2Q9BXP8 1791 aa14.34□□□□□ -0.11
SDC1-202ENST00000381150 F8W8V4 182 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 KRT37O76014 449 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 VNN1O95497 513 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 APRTP07741 180 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 CD48P09326 243 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 SRGAP2CP0DJJ0 459 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 SRGAP2BP0DMP2 458 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 RBP3P10745 1247 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 PSMA2P25787 234 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 RAP1GDS1P52306 607 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 NLRP11P59045 1033 aaKnown RBP14.33□□□□□ -0.11
SDC1-202ENST00000381150 EIF3EP60228 445 aaKnown RBP14.33□□□□□ -0.11
SDC1-202ENST00000381150 STXBP2Q15833 593 aa14.33□□□□□ -0.11
SDC1-202ENST00000381150 TFDP3Q5H9I0 405 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms