RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 APOA4P06727 396 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 CNPP09543 421 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 KLRC1P26715 233 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 CDK16Q00536 496 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 BMPR2Q13873 1038 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FASTKQ14296 549 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 C6orf52Q5T4I8 152 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 N4BP2L1Q5TBK1 243 aaPredicted RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TBC1D10CQ8IV04 446 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 PHC2Q8IXK0 858 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 CAPN10Q9HC96 672 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 MRPS7Q9Y2R9 242 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 DCXO43602 365 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 CCDC166P0CW27 439 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 IL2RBP14784 551 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ME2P23368 584 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 MPP3Q13368 585 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 RP1P56715 2156 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TPTEP56180 551 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 OLR1P78380 273 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 UNKQ9C0B0 810 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 IRF2BPLQ9H1B7 796 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 EHD1Q9H4M9 534 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 INTS10Q9NVR2 710 aaKnown RBP12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 LIFRP42702 1097 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 IDI1Q13907 227 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 EPC2Q52LR7 807 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 DENND6BQ8NEG7 585 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM172AQ8WUF8 416 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 TATDN2Q93075 761 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 ZSWIM1Q9BR11 485 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SEMA4AQ9H3S1 761 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 THAP1Q9NVV9 213 aa12.08□□□□□ -0.48
SHROOM3-201ENST00000296043 SLC5A3P53794 718 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 AFG1LQ8WV93 481 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 PHF11Q9UIL8 331 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ARHGEF33A8MVX0 844 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CYP2E1P05181 493 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 POLR2EP19388 210 aaKnown RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MTFR1Q15390 333 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 SYDE2Q5VT97 1194 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CYB5R4Q7L1T6 521 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MCFD2Q8NI22 146 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ZNF75CPQ92670 426 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 TTYH1Q9H313 450 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 RNF112Q9ULX5 631 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CYP4B1P13584 511 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 UCHL3P15374 230 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ERMARDQ5T6L9 678 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CENPIQ92674 756 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 STK36Q9NRP7 1315 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 LAMC1P11047 1609 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 TIMM44O43615 452 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 NCK1P16333 377 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 GTF2IP78347 998 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 BNC1Q01954 994 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 UBAP2LQ14157 1087 aaKnown RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 UBE3CQ15386 1083 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ULK2Q8IYT8 1036 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CYP4Z2PQ8N1L4 340 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ANKS1AQ92625 1134 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM136AQ96C01 138 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CLK4Q9HAZ1 481 aaKnown RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 TMEM260Q9NX78 707 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ADD2P35612 726 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ZNF613Q6PF04 617 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ELOA2Q8IYF1 753 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 EIF3LQ9Y262 564 aaKnown RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 GRIN2BQ13224 1484 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 DENND3A2RUS2 1198 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 DEFA5Q01523 94 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CASP12Q6UXS9 341 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 PAGE2Q7Z2X7 111 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MINDY2Q8NBR6 621 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 KRT35Q92764 455 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 STARD7Q9NQZ5 370 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 SAR1AQ9NR31 198 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 GPRC5DQ9NZD1 345 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 STAP1Q9ULZ2 295 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 SNX7Q9UNH6 387 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 SF3B1O75533 1304 aaKnown RBP eCLIP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 USP17L5A8MUK1 530 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 GPC3P51654 580 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 FAAH2Q6GMR7 532 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 LIN54Q6MZP7 749 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 SYNPOQ8N3V7 929 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CIDEBQ9UHD4 219 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 EDARQ9UNE0 448 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 NAALADL1Q9UQQ1 740 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CASZ1Q86V15 1759 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MSLNQ13421 630 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 TOP3AQ13472 1001 aaPredicted RBP12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 CLEC16AQ2KHT3 1053 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 DENND1BQ6P3S1 775 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 PRKAB1Q9Y478 270 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ALG6Q9Y672 507 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MAST1Q9Y2H9 1570 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 KPNA5O15131 536 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 ECE2O60344 883 aa12.07□□□□□ -0.48
SHROOM3-201ENST00000296043 MOCS2O96007 188 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms