RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SPATA31D4Q6ZUB0 917 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 MYLK4Q86YV6 388 aaPredicted RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 PPHLN1Q8NEY8 458 aaKnown RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 ADAM32Q8TC27 787 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 WNT8BQ93098 351 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 SHISA4Q96DD7 197 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 UBXN6Q9BZV1 441 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 FAM124BQ9H5Z6 455 aaPredicted RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 NFU1Q9UMS0 254 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 GNEQ9Y223 722 aaKnown RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 TSPAN3O60637 253 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 ZNF135P52742 658 aaPredicted RBP10.2□□□□□ -0.78
LIG3-216ENST00000593099 ACAP1Q15027 740 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 ERMARDQ5T6L9 678 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 KLC3Q6P597 504 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 LGI2Q8N0V4 545 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 SPATA4Q8NEY3 305 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 RAPGEF5Q92565 580 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 WDR24Q96S15 920 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 CNGB3Q9NQW8 809 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 SLC30A1Q9Y6M5 507 aa10.2□□□□□ -0.78
LIG3-216ENST00000593099 IQANK1A0A1B0GTG1 560 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 RAMP2O60895 175 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ANXA9O76027 345 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ACSL3O95573 720 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 TRUB2O95900 331 aaKnown RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 CSF2RAP15509 400 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 CENPCQ03188 943 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 GTF2H3Q13889 308 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 INTS6LQ5JSJ4 861 aaKnown RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 C6orf118Q5T5N4 469 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 SDHAF4Q5VUM1 108 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 CDCA2Q69YH5 1023 aaPredicted RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 WDR59Q6PJI9 974 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 LMNTD2Q8IXW0 634 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ACBD6Q9BR61 282 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 TMEM175Q9BSA9 504 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 GJD2Q9UKL4 321 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 CBX4O00257 560 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 CLDN5O00501 218 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 PITPNM1O00562 1244 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 XPO1O14980 1071 aaKnown RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 KRT38O76015 456 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 CST3P01034 146 aaPredicted RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 STIP1P31948 543 aaKnown RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 CHKAP35790 457 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 TUBP50607 506 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 TMED2Q15363 201 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 PCSK7Q16549 785 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 EMBQ6PCB8 327 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 MON1AQ86VX9 555 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 C12orf29Q8N999 325 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 IPMKQ8NFU5 416 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 MYCBPAPQ8TBZ2 947 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 FRMD8P1Q9BZ68 369 aaPredicted RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 GANQ9H2C0 597 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 AMACRQ9UHK6 382 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 PHF24Q9UPV7 400 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 OR4Q2P0C623 313 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 RHOAP61586 193 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 KCNMA1Q12791 1236 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 PDIA2Q13087 525 aaKnown RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 RPS6KA2Q15349 733 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 TFDP3Q5H9I0 405 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ZNF697Q5TEC3 545 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 SLC13A5Q86YT5 568 aaPredicted RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 LZTR1Q8N653 840 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 MCUQ8NE86 351 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 SLC9A7Q96T83 725 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 GPR63Q9BZJ6 419 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 MFSD1Q9H3U5 465 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 IL23AQ9NPF7 189 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 DMAC2Q9NW81 257 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 N4BP2Q86UW6 1770 aaPredicted RBP10.19□□□□□ -0.78
LIG3-216ENST00000593099 E5RI56 91 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 NRP1O14786 923 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 RASGRF2O14827 1237 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ATP2C2O75185 946 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 IQCF3P0C7M6 154 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 EXD1Q8NHP7 514 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 SEMA4DQ92854 862 aa10.19□□□□□ -0.78
LIG3-216ENST00000593099 ATP4AP20648 1035 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 COPS2P61201 443 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 CCDC6Q16204 474 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 PPP1R26Q5T8A7 1209 aaPredicted RBP10.18□□□□□ -0.78
LIG3-216ENST00000593099 NAPEPLDQ6IQ20 393 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 ATP11CQ8NB49 1132 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 MCOLN1Q9GZU1 580 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 OSGEPQ9NPF4 335 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 UBA6A0AVT1 1052 aaPredicted RBP10.18□□□□□ -0.78
LIG3-216ENST00000593099 NCAM2O15394 837 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 TLR5O60602 858 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 CILPO75339 1184 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 PLA2G4AP47712 749 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 EIF3BP55884 814 aaKnown RBP10.18□□□□□ -0.78
LIG3-216ENST00000593099 SMAD3P84022 425 aaKnown RBP10.18□□□□□ -0.78
LIG3-216ENST00000593099 ZCWPW2Q504Y3 356 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 BADQ92934 168 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 RNF39Q9H2S5 420 aa10.18□□□□□ -0.78
LIG3-216ENST00000593099 SARS2Q9NP81 518 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms