RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PDGFRAP16234 1089 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 TGM2P21980 687 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 CCNFP41002 786 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 WASHC5Q12768 1159 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 MMRN1Q13201 1228 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 HIC1Q14526 733 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 MPZL3Q6UWV2 235 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 IZUMO2Q6UXV1 221 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 CDKL3Q8IVW4 592 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF280CQ8ND82 737 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 DEPDC1BQ8WUY9 529 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 ATP2A3Q93084 1043 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 MCRS1Q96EZ8 462 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 RNF157Q96PX1 679 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 MAF1Q9H063 256 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 SIRPGQ9P1W8 387 aa11.17□□□□□ -0.62
CCDC40-207ENST00000572253 MSCO60682 206 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 IL18RAPO95256 599 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 SERPINA6P08185 405 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 PRKCHP24723 683 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 NRLP54845 237 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 BMPR2Q13873 1038 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 BOLA3Q53S33 107 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 RNF220Q5VTB9 566 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 SCARA3Q6AZY7 606 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 OR52E8Q6IFG1 317 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ARCQ7LC44 396 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CEP120Q8N960 986 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 GSDMBQ8TAX9 411 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 HEXIM2Q96MH2 286 aaKnown RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CCDC28BQ9BUN5 200 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 SDCBP2Q9H190 292 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 FAM96AQ9H5X1 160 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 THAP1Q9NVV9 213 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CYTH4Q9UIA0 394 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CAPN14A8MX76 684 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 GAS2O43903 313 aaKnown RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 B4GALT4O60513 344 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 MICAL2O94851 1124 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 KLHL2O95198 593 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 BPGMP07738 259 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 HOXC6P09630 235 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ACTR3P61158 418 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 DBN1Q16643 649 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CDO1Q16878 200 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 FAXCQ5TGI0 409 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CDHR3Q6ZTQ4 885 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 TREML1Q86YW5 311 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 PPP4R1Q8TF05 950 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ZFAND2BQ8WV99 257 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 GCOM2Q9BZD3 368 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 XYLT2Q9H1B5 865 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 POPDC2Q9HBU9 364 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ZNF214Q9UL59 606 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 SOX13Q9UN79 622 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 APOBEC2Q9Y235 224 aaKnown RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 HBS1LQ9Y450 684 aaKnown RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 E5RJQ4 531 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 UBTFL6P0CB48 400 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 CNTFP26441 200 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 SP2Q02086 613 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 MROH9Q5TGP6 573 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 RXFP2Q8WXD0 754 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ZBED3Q96IU2 234 aaPredicted RBP11.16□□□□□ -0.62
CCDC40-207ENST00000572253 ETNK2Q9NVF9 386 aa11.16□□□□□ -0.62
CCDC40-207ENST00000572253 VDRP11473 427 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 CRHR1P34998 444 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 GCLCP48506 637 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 HMGCS2P54868 508 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 LAMTOR4Q0VGL1 99 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 TMEM132BQ14DG7 1078 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 ATF7IP2Q5U623 682 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 RASIP1Q5U651 963 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 STKLD1Q8NE28 680 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 MCUQ8NE86 351 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 REPS2Q8NFH8 660 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 DNERQ8NFT8 737 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 TMEM176AQ96HP8 235 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 ECSITQ9BQ95 431 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 ASCC2Q9H1I8 757 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 XAB2Q9HCS7 855 aaKnown RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 ARHGEF4Q9NR80 690 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 KRT82Q9NSB4 513 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 INO80B-WBP1J3KQ70 363 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 HMGCRP04035 888 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 RBL1P28749 1068 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 CDH8P55286 799 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 IRX4P78413 519 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 ORC1Q13415 861 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 TARBP2Q15633 366 aaKnown RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 AAGABQ6PD74 315 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 KYAT3Q6YP21 454 aaKnown RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 MYLK4Q86YV6 388 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 CDKL2Q92772 493 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 PPP2R3CQ969Q6 453 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 CENPKQ9BS16 269 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 INO80BQ9C086 356 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-207ENST00000572253 C1orf21Q9H246 121 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 VPS33BQ9H267 617 aa11.15□□□□□ -0.62
CCDC40-207ENST00000572253 CYP3A43Q9HB55 503 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms